hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15303227/chunk_1/iprscan-20080502-15303227.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0873 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02179.6.ls BAG domain 394.0 2.1e-115 4 PF02179.6.fs BAG domain 386.4 4.1e-113 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02179.6.fs 1/4 28 105 .. 1 90 [] 91.3 1e-25 PF02179.6.ls 1/4 28 105 .. 1 90 [] 93.2 7.2e-25 PF02179.6.ls 2/4 201 279 .. 1 90 [] 97.9 2.7e-26 PF02179.6.fs 2/4 201 279 .. 1 90 [] 96.0 4.6e-27 PF02179.6.fs 3/4 294 369 .. 1 90 [] 86.5 2.5e-24 PF02179.6.ls 3/4 294 369 .. 1 90 [] 88.4 2e-23 PF02179.6.ls 4/4 384 461 .. 1 90 [] 114.4 3e-31 PF02179.6.fs 4/4 384 461 .. 1 90 [] 112.5 8.1e-32 Alignments of top-scoring domains: PF02179.6.fs: domain 1 of 4, from 28 to 105: score 91.3, E = 1e-25 *->siakinevlgeVlKlvrkieqevqssdadgkkddkeylrlsElLmkl si++++e+++eV +++eq+v ++g +ddk+y+ l+++L+k+ KIAA0873 28 SISRLQEIQKEV----KSVEQQVIG--FSGLSDDKNYKKLERILTKQ 68 LlkLDsmvdvegnaEslaediReaRKrlvrkiqalLeklDskk<-* L+++Ds vd+eg+ di++aRKr+++++++lL++l++++ KIAA0873 69 LFEIDS-VDTEGK-----GDIQQARKRAAQETERLLKELEQNA 105 PF02179.6.ls: domain 1 of 4, from 28 to 105: score 93.2, E = 7.2e-25 *->siakinevlgeVlKlvrkieqevqssdadgkkddkeylrlsElLmkl si++++e+++eV +++eq+v ++g +ddk+y+ l+++L+k+ KIAA0873 28 SISRLQEIQKEV----KSVEQQVIG--FSGLSDDKNYKKLERILTKQ 68 LlkLDsmvdvegnaEslaediReaRKrlvrkiqalLeklDskk<-* L+++Ds vd+eg+ di++aRKr+++++++lL++l++++ KIAA0873 69 LFEIDS-VDTEGK-----GDIQQARKRAAQETERLLKELEQNA 105 PF02179.6.ls: domain 2 of 4, from 201 to 279: score 97.9, E = 2.7e-26 *->siakinevlgeVlKlvrkieqevqssdadgkkddkeylrlsElLmkl s+akin+v++eV+K+ r+++ ++++ g ++++++++ls++L +l KIAA0873 201 SVAKINFVMCEVNKA-RGVLIALLM----GVNNNETCRHLSCVLSGL 242 LlkLDsmvdvegnaEslaediReaRKrlvrkiqalLeklDskk<-* + +LD+ +dv+g+ ++iR++R+++v++i++lL++lD+++ KIAA0873 243 IADLDA-LDVCGR-----TEIRNYRREVVEDINKLLKYLDLEE 279 PF02179.6.fs: domain 2 of 4, from 201 to 279: score 96.0, E = 4.6e-27 *->siakinevlgeVlKlvrkieqevqssdadgkkddkeylrlsElLmkl s+akin+v++eV+K+ r+++ ++++ g ++++++++ls++L +l KIAA0873 201 SVAKINFVMCEVNKA-RGVLIALLM----GVNNNETCRHLSCVLSGL 242 LlkLDsmvdvegnaEslaediReaRKrlvrkiqalLeklDskk<-* + +LD+ +dv+g+ ++iR++R+++v++i++lL++lD+++ KIAA0873 243 IADLDA-LDVCGR-----TEIRNYRREVVEDINKLLKYLDLEE 279 PF02179.6.fs: domain 3 of 4, from 294 to 369: score 86.5, E = 2.5e-24 *->siakinevlgeVlKlvrkieqevqssdadgkkddkeylrlsElLmkl si ki++vl+++ r+i++e+++ +++++++yl ++++L++l KIAA0873 294 SILKIEKVLKRM----REIKNELLQ----AQNPSELYLSSKTELQGL 332 LlkLDsmvdvegnaEslaediReaRKrlvrkiqalLeklDskk<-* + +LD+ v +e+n ++iReaR+r+v ++q+l++++D+k+ KIAA0873 333 IGQLDE-VSLEKN-----PCIREARRRAVIEVQTLITYIDLKE 369 PF02179.6.ls: domain 3 of 4, from 294 to 369: score 88.4, E = 2e-23 *->siakinevlgeVlKlvrkieqevqssdadgkkddkeylrlsElLmkl si ki++vl+++ r+i++e+++ +++++++yl ++++L++l KIAA0873 294 SILKIEKVLKRM----REIKNELLQ----AQNPSELYLSSKTELQGL 332 LlkLDsmvdvegnaEslaediReaRKrlvrkiqalLeklDskk<-* + +LD+ v +e+n ++iReaR+r+v ++q+l++++D+k+ KIAA0873 333 IGQLDE-VSLEKN-----PCIREARRRAVIEVQTLITYIDLKE 369 PF02179.6.ls: domain 4 of 4, from 384 to 461: score 114.4, E = 3e-31 *->siakinevlgeVlKlvrkieqevqssdadgkkddkeylrlsElLmkl s++++++vlg++ +i+ ev+s +dg+++dk+y rl+ElL+k+ KIAA0873 384 SHKAVWNVLGNL----SEIQGEVLS--FDGNRTDKNYIRLEELLTKQ 424 LlkLDsmvdvegnaEslaediReaRKrlvrkiqalLeklDskk<-* Ll+LD+ vd++g+ e+++ aRK++vr+ q++L++lD+k+ KIAA0873 425 LLALDA-VDPQGE-----EKCKAARKQAVRLAQNILSYLDLKS 461 PF02179.6.fs: domain 4 of 4, from 384 to 461: score 112.5, E = 8.1e-32 *->siakinevlgeVlKlvrkieqevqssdadgkkddkeylrlsElLmkl s++++++vlg++ +i+ ev+s +dg+++dk+y rl+ElL+k+ KIAA0873 384 SHKAVWNVLGNL----SEIQGEVLS--FDGNRTDKNYIRLEELLTKQ 424 LlkLDsmvdvegnaEslaediReaRKrlvrkiqalLeklDskk<-* Ll+LD+ vd++g+ e+++ aRK++vr+ q++L++lD+k+ KIAA0873 425 LLALDA-VDPQGE-----EKCKAARKQAVRLAQNILSYLDLKS 461 //