hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15303227/chunk_1/iprscan-20080502-15303227.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0873 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00264 387.4 8.5e-112 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00264 1/4 28 105 .. 1 91 [] 91.6 9.6e-23 SM00264 2/4 201 279 .. 1 91 [] 96.5 3.2e-24 SM00264 3/4 294 369 .. 1 91 [] 86.0 4.6e-21 SM00264 4/4 384 461 .. 1 91 [] 113.4 2.5e-29 Alignments of top-scoring domains: SM00264: domain 1 of 4, from 28 to 105: score 91.6, E = 9.6e-23 *->siakinevlgeVlKlerkieqevqssdfdgkkddkeylmlsElLmkl si++++e+++eV +++eq+v f+g +ddk+y+ l+++L+k+ KIAA0873 28 SISRLQEIQKEV----KSVEQQVIG--FSGLSDDKNYKKLERILTKQ 68 LlkLDsmlvdvegraEslaediReaRKrlvreiqklLkklDslk<-* L+++Ds vd+eg+ di++aRKr+++e+++lLk+l++++ KIAA0873 69 LFEIDS--VDTEGK-----GDIQQARKRAAQETERLLKELEQNA 105 SM00264: domain 2 of 4, from 201 to 279: score 96.5, E = 3.2e-24 *->siakinevlgeVlKlerkieqevqssdfdgkkddkeylmlsElLmkl s+akin+v++eV+K+ r+++ ++++ g ++++++++ls++L +l KIAA0873 201 SVAKINFVMCEVNKA-RGVLIALLM----GVNNNETCRHLSCVLSGL 242 LlkLDsmlvdvegraEslaediReaRKrlvreiqklLkklDslk<-* + +LD+ dv+gr ++iR++R+++v++i+klLk+lD+++ KIAA0873 243 IADLDA--LDVCGR-----TEIRNYRREVVEDINKLLKYLDLEE 279 SM00264: domain 3 of 4, from 294 to 369: score 86.0, E = 4.6e-21 *->siakinevlgeVlKlerkieqevqssdfdgkkddkeylmlsElLmkl si+ki++vl+++ r+i++e+++ +++++++yl ++++L++l KIAA0873 294 SILKIEKVLKRM----REIKNELLQ----AQNPSELYLSSKTELQGL 332 LlkLDsmlvdvegraEslaediReaRKrlvreiqklLkklDslk<-* + +LD+ v +e++ ++iReaR+r+v e+q+l++++D+++ KIAA0873 333 IGQLDE--VSLEKN-----PCIREARRRAVIEVQTLITYIDLKE 369 SM00264: domain 4 of 4, from 384 to 461: score 113.4, E = 2.5e-29 *->siakinevlgeVlKlerkieqevqssdfdgkkddkeylmlsElLmkl s++++++vlg++ +i+ ev+s fdg+++dk+y +l+ElL+k+ KIAA0873 384 SHKAVWNVLGNL----SEIQGEVLS--FDGNRTDKNYIRLEELLTKQ 424 LlkLDsmlvdvegraEslaediReaRKrlvreiqklLkklDslk<-* Ll+LD+ vd++g+ e+++ aRK++vr+ q++L++lD+++ KIAA0873 425 LLALDA--VDPQGE-----EKCKAARKQAVRLAQNILSYLDLKS 461 //