hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15334965/chunk_1/iprscan-20080502-15334965.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0875 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08755.1.ls Hemimethylated DNA-binding protein YccV lik 177.0 4.2e-50 1 PF08755.1.fs Hemimethylated DNA-binding protein YccV lik 175.1 1.6e-49 1 PF00646.23.fs F-box domain 20.1 0.00025 1 PF00646.23.ls F-box domain 22.1 0.0018 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00646.23.fs 1/1 28 77 .. 1 46 [] 20.1 0.00025 PF00646.23.ls 1/1 28 77 .. 1 46 [] 22.1 0.0018 PF08755.1.fs 1/1 493 593 .. 1 108 [] 175.1 1.6e-49 PF08755.1.ls 1/1 493 593 .. 1 108 [] 177.0 4.2e-50 Alignments of top-scoring domains: PF00646.23.fs: domain 1 of 1, from 28 to 77: score 20.1, E = 0.00025 *->fslldLPdellleIlsrLdpkd..llrlslVSkrwrslvdsl.lwk. ++l +LP e+l+ Il++ ++ ++ r+s++++r+r+l++s ++ ++ KIAA0875 28 SCLVNLPGEVLEYILCCGSLTAadIGRVSSTCRRLRELCQSSgKVWk 74 kll<-* KIAA0875 75 EQF 77 PF00646.23.ls: domain 1 of 1, from 28 to 77: score 22.1, E = 0.0018 *->fslldLPdellleIlsrLdpkd..llrlslVSkrwrslvdsl.lwk. ++l +LP e+l+ Il++ ++ ++ r+s++++r+r+l++s ++ ++ KIAA0875 28 SCLVNLPGEVLEYILCCGSLTAadIGRVSSTCRRLRELCQSSgKVWk 74 kll<-* KIAA0875 75 EQF 77 PF08755.1.fs: domain 1 of 1, from 493 to 593: score 175.1, E = 1.6e-49 *->eAKFrIGQvVRHklfgyRGViiDvDPefanseeWyeaipeesrpaGk +++++IG +++Hk++gy++Vi+++DP++++++eW+++++++s+p+G+ KIAA0875 493 DVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGH 539 dQPfYHvLvEvrdeeteyvHaYVaEqNLladePsgepieHPqldelFdgf +QPfY+vLvE d++ + +Y a++NL+++ ++++i HP+++++F++f KIAA0875 540 HQPFYNVLVE--DGS---C-RYAAQENLEYNV-EPQEISHPDVGRYFSEF 582 ddgrykprlrh<-* ++++y+p++++ KIAA0875 583 TGTHYIPNAEL 593 PF08755.1.ls: domain 1 of 1, from 493 to 593: score 177.0, E = 4.2e-50 *->eAKFrIGQvVRHklfgyRGViiDvDPefanseeWyeaipeesrpaGk +++++IG +++Hk++gy++Vi+++DP++++++eW+++++++s+p+G+ KIAA0875 493 DVCYSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGH 539 dQPfYHvLvEvrdeeteyvHaYVaEqNLladePsgepieHPqldelFdgf +QPfY+vLvE d++ + +Y a++NL+++ ++++i HP+++++F++f KIAA0875 540 HQPFYNVLVE--DGS---C-RYAAQENLEYNV-EPQEISHPDVGRYFSEF 582 ddgrykprlrh<-* ++++y+p++++ KIAA0875 583 TGTHYIPNAEL 593 //