HUGE

Gene/Protein Characteristic Table for KIAA0879

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00142
Accession No. :	AB020686
Description :	ectonucleotide pyrophosphatase/phosphodiesterase 4.
HUGO Gene Name :	ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) (ENPP4)
Clone Name :	hk07371 [Vector Info]
Flexi ORF Clone :	pF1KA0879
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4312 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2902 bp

Genome contig ID gi89161210f_46115246
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
AATAGTGTGTAAATAAAATAACATCAGTGTGCTTT
Flanking genome sequence
(106993 - 107042)
----+----*----+----*----+----*----+----*----+----*
AAAGAAATGTGTATGTAGTGCCTTAATTTAAATTAAAATATTTTTGACTG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 6 f 46205871 46222237 4 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 461 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q9Y6X5	2.2e-200	100.0	Ectonucleotide ...	Homo sapiens
XP_518515	4e-200	99.8	ectonucleotide ...	Pan troglodytes
EAX04292	8.8e-200	99.8	ectonucleotide ...	Homo sapiens
BAF83965	3.6e-199	99.6	unnamed protein...	Homo sapiens
Q5RAC0	4.6e-196	98.2	Ectonucleotide ...	Pongo abelii

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR002591 34 347 PF01663 Type I phosphodiesterase/nucleotide pyrophosphatase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002591	34	347	PF01663	Type I phosphodiesterase/nucleotide pyrophosphatase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 3 SFNVFIMKLLVILLFSGLITGFR 25 PRIMARY 23

2 412 LPEAIAIVIGSLLVLTMLTCLII 434 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	3	SFNVFIMKLLVILLFSGLITGFR	25	PRIMARY	23
2	412	LPEAIAIVIGSLLVLTMLTCLII	434	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTGGGTGTCTCCTTCTTGTGC

Primer_r
: TACACATTTTCCATCTCCTCC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 6

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TTGGGTGTCTCCTTCTTGTGC
Primer_r	: TACACATTTTCCATCTCCTCC
PCR product length	: 139 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2902 bp
Genome contig ID	gi89161210f_46115246
PolyA signal sequence (AATAAA,-24)	+--------+--------+----*----+---- AATAGTGTGTAAATAAAATAACATCAGTGTGCTTT
Flanking genome sequence (106993 - 107042)	----+--------+--------+--------+--------+----* AAAGAAATGTGTATGTAGTGCCTTAATTTAAATTAAAATATTTTTGACTG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	6	f	46205871	46222237	4	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0879

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information