HUGE

Gene/Protein Characteristic Table for KIAA0880

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK01613
Accession No. :	AB020687
Description :	Solute carrier organic anion transporter family member 2B1.
HUGO Gene Name :
Clone Name :	hk07457 [Vector Info]
Flexi ORF Clone :	pF1KSDA0880
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4068 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1672 bp

Genome contig ID gi51511727f_74439809
PolyA signal sequence
(ATTAAA,-19)
+----*----+----*----+----*----+----
ATAGATACAGCTTATTATTAAATTTGTTCTTGCAT
Flanking genome sequence
(155138 - 155187)
----+----*----+----*----+----*----+----*----+----*
AATGTCTCTTCTATTACAAAAATTCTTTCTTCATAAACTGCATTAGAGGT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 11 f 74539809 74594945 14 99.8 Perfect prediction

Features of the protein sequence	Description

Length: 727 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
O94956	100.0	Solute carrier ...	Homo sapiens
BAF82923	99.9	unnamed protein...	Homo sapiens
XP_001174975	99.2	solute carrier ...	Pan troglodytes
XP_522110	98.6	solute carrier ...	Pan troglodytes
BAG57720	100.0	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004156 66 666 PF03137 Organic anion transporter polypeptide OATP

HMMTigr IPR004156 35 693 TIGR00805 Organic anion transporter polypeptide OATP

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004156	66	666	PF03137	Organic anion transporter polypeptide OATP
HMMTigr	IPR004156	35	693	TIGR00805	Organic anion transporter polypeptide OATP

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 62 VFHNIKLFVLCHSLLQLAQLMIS 84 SECONDARY 23

2 135 MIGYGAILVALAGLLMTLPHFIS 157 PRIMARY 23

3 207 VGIMFVAQTLLGVGGVPIQPFGI 229 SECONDARY 23

4 244 YLGILFAVTMMGPGLAFGLGSLM 266 SECONDARY 23

5 293 AWWLGFLIAAGAVALAAIPYFFF 315 PRIMARY 23

6 393 LVVLSQVCLSSMAAGMATFLPKF 415 SECONDARY 23

7 427 ANLLIGCLSFPSVIVGIVVGGVL 449 PRIMARY 23

8 459 GCGALCLLGMLLCLFFSLPLFFI 481 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	62	VFHNIKLFVLCHSLLQLAQLMIS	84	SECONDARY	23
2	135	MIGYGAILVALAGLLMTLPHFIS	157	PRIMARY	23
3	207	VGIMFVAQTLLGVGGVPIQPFGI	229	SECONDARY	23
4	244	YLGILFAVTMMGPGLAFGLGSLM	266	SECONDARY	23
5	293	AWWLGFLIAAGAVALAAIPYFFF	315	PRIMARY	23
6	393	LVVLSQVCLSSMAAGMATFLPKF	415	SECONDARY	23
7	427	ANLLIGCLSFPSVIVGIVVGGVL	449	PRIMARY	23
8	459	GCGALCLLGMLLCLFFSLPLFFI	481	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GAGCATGTATCTATCAACGCC

Primer_r
: CTGCAAAACCTGGGAAACAAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 11

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CTGCAAAACCTGGGAAACAAG
Primer_r	: GAGCATGTATCTATCAACGCC
PCR product length	: 105 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1672 bp
Genome contig ID	gi51511727f_74439809
PolyA signal sequence (ATTAAA,-19)	+--------+--------+----*----+---- ATAGATACAGCTTATTATTAAATTTGTTCTTGCAT
Flanking genome sequence (155138 - 155187)	----+--------+--------+--------+--------+----* AATGTCTCTTCTATTACAAAAATTCTTTCTTCATAAACTGCATTAGAGGT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	11	f	74539809	74594945	14	99.8	Perfect prediction

Gene/Protein Characteristic Table for KIAA0880

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information