hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15453487/chunk_1/iprscan-20080502-15453487.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0882 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00164 203.3 2.2e-56 1 SM00568 189.1 4.2e-52 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00568 1/2 171 238 .. 1 80 [] 104.6 1.1e-26 SM00568 2/2 318 386 .. 1 80 [] 84.5 1.3e-20 SM00164 1/1 537 750 .. 1 310 [] 203.3 2.2e-56 Alignments of top-scoring domains: SM00568: domain 1 of 2, from 171 to 238: score 104.6, E = 1.1e-26 *->ekFrklFkLpeeEkLiadcekeVtysCyLsttgdipvqGrlyiSnnr kF++lF++peeEkL+++ ysC ++++ ++p+qG++y+S n+ KIAA0882 171 VKFHRLFGMPEEEKLVNY------YSCSYWKG-KVPRQGWMYLSINH 210 lcFrSnlfgkltppqyykvviPLadItrieKst<-* lcF+S+l+g+++ k+vi ++dIt +eK + KIAA0882 211 LCFYSFLMGREA-----KLVIRWVDITQLEKNA 238 SM00568: domain 2 of 2, from 318 to 386: score 84.5, E = 1.3e-20 *->ekFrklFkLpeeEkLiadcekeVtysCyLsttg.dipvqGrlyiSnn e++r lF+Lp++EkL+++ + C+L+t+++++++ G++++S+n KIAA0882 318 ERYRALFRLPKDEKLDGH------TDCTLWTPFnKMHILGQMFVSTN 358 rlcFrSnlfgkltppqyykvviPLadItrieKst<-* ++cF S ++ +l+ +++iPL+++t +eK KIAA0882 359 YICFTS-KEENLC-----SLIIPLREVTIVEKAD 386 SM00164: domain 1 of 1, from 537 to 750: score 203.3, E = 2.2e-56 *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd v kG+p+s+Rge+W lL++a ++ + KIAA0882 537 VLKGIPESMRGELWLLLSGAINEK----------------------A 561 rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl + +++Y++l ++ +k ++ KIAA0882 562 THPGYYEDLVEKSMGKYNLAT----------------------------- 582 dqIekDlkRtfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl Ie+Dl+R +pe++ Fq+++ g+ +LrrvL+aY+ KIAA0882 583 EEIERDLHRSLPEHPAFQNEM---------------GIAALRRVLTAYAF 617 ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk +np+ +gYcQ mn ++++LLl+ Ee+AFw++v+L+er+lp ++ KIAA0882 618 RNPN--IGYCQAMNIVTSVLLLYA---KEEEAFWLLVALCERMLPDYY-- 660 dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqskkkhvdkl g+ dq v++ l ++y P+Ly +q++ KIAA0882 661 ------NTRVVGALVDQGVFEELARDYVPQLYDCMQDL------------ 692 eidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkiala s +l+WfLtlF + +P+e ++ + D++f+e g +++f+ ala KIAA0882 693 -GVISTISLSWFLTLFLSVMPFESAVVVVDCFFYE----GIKVIFQLALA 737 iLklnedkllkld<-* +L+ n dkll + KIAA0882 738 VLDANVDKLLNCK 750 //