# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk07589.fasta.huge -Q ../query/KIAA0883.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0883, 373 aa vs ./tmplib.23663 library 1987132 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.2884+/-0.00489; mu= 18.3197+/- 0.334 mean_var=100.1158+/-23.600, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.128181 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1934 ( 452 res) fk02059 ( 452) 1047 203.6 1.8e-53 >>KIAA1934 ( 452 res) fk02059 (452 aa) initn: 1038 init1: 624 opt: 1047 Z-score: 1051.9 bits: 203.6 E(): 1.8e-53 Smith-Waterman score: 1047; 46.685% identity (76.519% similar) in 362 aa overlap (10-366:5-353) 10 20 30 40 50 60 KIAA08 SQSGSILRTMALALLEDWCRIMSVDEQKSLMVTGIPADFEEAEIQEVLQETLKSLGRYRL :::.::::::. :..: .:.:...::: . :.:::.... :. : ::. KIAA19 KVGAMALTLLEDWCKGMDMDPRKALLIVGIPMECSEVEIQDTVKAGLQPLCAYRV 10 20 30 40 50 70 80 90 100 110 120 KIAA08 LGKIFRKQENANAVLLELLEDTDVSAIPSEVQGKGGVWKVIFKTPNQDTEFLERLNLFLE ::..::...::.::..:: . .. ...::.. :::: :.:. : : : ::: ::: ::. KIAA19 LGRMFRREDNAKAVFIELADTVNYTTLPSHIPGKGGSWEVVVKPRNPDDEFLSRLNYFLK 60 70 80 90 100 110 130 140 150 160 170 KIAA08 KEGQTVSGMFRALGQEGVSPATVPCISPELLAHLLGQAMAHAPQPLLP----MRYRKLRV ::.... . :::: ..: : : :... :. ..: :: : : ::::.: KIAA19 DEGRSMTDVARALGC-----CSLPAES--LDAEVMPQV--RSP-PLEPPKESMWYRKLKV 120 130 140 150 160 180 190 200 210 220 230 KIAA08 FSGSAVPAPEEESFEVWLEQATEIVKEWPVTEAEKKRWLAESLRGPALDLMHIVQADNPS :::.: :.: ::.:: ::::.:::. : :.:.::.: : ::::::::..:...::.: : KIAA19 FSGTASPSPGEETFEDWLEQVTEIMPIWQVSEVEKRRRLLESLRGPALSIMRVLQANNDS 170 180 190 200 210 220 240 250 260 270 280 290 KIAA08 ISVEECLEAFKQVFGSLESRRTAQVRYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPR :.::.::.:.::.::. :. :..: :.:.: . :::::...:::: ::..::.: . KIAA19 ITVEQCLDALKQIFGDKEDFRASQFRFLQTSPKIGEKVSTFLLRLEPLLQKAVHKSPLSV 230 240 250 260 270 280 300 310 320 330 340 350 KIAA08 RIADQVRLEQVMAGATLNQMLWCRLRELKDQGPPPSFLELMKVIREEEEEEASFENESIE : .:..::....: .... : .:. : ..: ::.::::::.::.::: : . :.. KIAA19 RSTDMIRLKHLLARVAMTPALRGKLELLDQRGCPPNFLELMKLIRDEEEWENT---EAVM 290 300 310 320 330 340 360 370 KIAA08 EPEER-DGYGRWNHEGDD . .:. .: :: KIAA19 KNKEKPSGRGRGASGRQARAEASVSAPQATVQARSFSDSSPQTIQGGLPPLVKRRRLLGS 350 360 370 380 390 400 373 residues in 1 query sequences 1987132 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:20:01 2008 done: Thu Dec 18 15:20:01 2008 Total Scan time: 0.390 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]