hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15472295/chunk_1/iprscan-20080502-15472295.nocrc
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Query sequence: KIAA0883
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF03732.7.fs   Retrotransposon gag protein               17.0    0.00019   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF03732.7.fs     1/1     213   288 ..     1    78 [.    17.0  0.00019

Alignments of top-scoring domains:
PF03732.7.fs: domain 1 of 1, from 213 to 288: score 17.0, E = 0.00019
                   *->klavhsLeGaAltWwkslvarsidaidsWdelkdaFlkrFvpsarkd
                      +  ++sL+G+Al   + ++a ++   +s +e+ +aF+ +F  ++ ++
    KIAA0883   213    RWLAESLRGPALDLMHIVQADNPS--ISVEECLEAFKQVFGSLESRR 257  

                   qleseLrqLrQkgtesvrEYverFkrlarql<-*
                   +++ + +   Q+ +e v  Yv r+++l+r++   
    KIAA0883   258 TAQVRYLKTYQEEGEKVSAYVLRLETLLRRA    288  

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