hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15522308/chunk_1/iprscan-20080502-15522308.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0886 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02453.8.ls Reticulon 369.2 5.9e-108 1 PF02453.8.fs Reticulon 367.4 2.1e-107 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02453.8.fs 1/1 1046 1231 .. 1 208 [] 367.4 2.1e-107 PF02453.8.ls 1/1 1046 1231 .. 1 208 [] 369.2 5.9e-108 Alignments of top-scoring domains: PF02453.8.fs: domain 1 of 1, from 1046 to 1231: score 367.4, E = 2.1e-107 *->vaDvllWRdkkkSGiVLgsaTalwvLFeLaeYsLltvvshillllLa v+D+l+WRd+kk+G+V+g++ l++L++L+ +s+++v+++i+l+lL+ KIAA0886 1046 VVDLLYWRDIKKTGVVFGAS--LFLLLSLTVFSIVSVTAYIALALLS 1090 vTISlflwsnvaqainKsdptiPFkaYLdeevtlPeElvlkladslrvhv vTIS+++++ v+qai+Ksd+++PF+aYL++ev+++eElv+k+++s+ hv KIAA0886 1091 VTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHV 1140 NrtlsiLrdlalvrDlvksLkvivgLWvltyvGawfNgLTLvyialvllF N+t+++Lr+l+lv+Dlv+sLk++v++Wv+tyvGa+fNgLTL+++al++lF KIAA0886 1141 NCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLF 1190 TvPvlYEKyqdqIDhyvekarkelkkqYavlDekVEskkakIlsKiPGlr +vPv+YE++q+qIDhy+++a+k +k++ +akI++KiP KIAA0886 1191 SVPVIYERHQAQIDHYLGLANKNVKDA-----------MAKIQAKIP--- 1226 slavrgslkkK<-* lk+K KIAA0886 1227 ------GLKRK 1231 PF02453.8.ls: domain 1 of 1, from 1046 to 1231: score 369.2, E = 5.9e-108 *->vaDvllWRdkkkSGiVLgsaTalwvLFeLaeYsLltvvshillllLa v+D+l+WRd+kk+G+V+g++ l++L++L+ +s+++v+++i+l+lL+ KIAA0886 1046 VVDLLYWRDIKKTGVVFGAS--LFLLLSLTVFSIVSVTAYIALALLS 1090 vTISlflwsnvaqainKsdptiPFkaYLdeevtlPeElvlkladslrvhv vTIS+++++ v+qai+Ksd+++PF+aYL++ev+++eElv+k+++s+ hv KIAA0886 1091 VTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHV 1140 NrtlsiLrdlalvrDlvksLkvivgLWvltyvGawfNgLTLvyialvllF N+t+++Lr+l+lv+Dlv+sLk++v++Wv+tyvGa+fNgLTL+++al++lF KIAA0886 1141 NCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLF 1190 TvPvlYEKyqdqIDhyvekarkelkkqYavlDekVEskkakIlsKiPGlr +vPv+YE++q+qIDhy+++a+k +k++ +akI++KiP KIAA0886 1191 SVPVIYERHQAQIDHYLGLANKNVKDA-----------MAKIQAKIP--- 1226 slavrgslkkK<-* lk+K KIAA0886 1227 ------GLKRK 1231 //