hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16023160/chunk_1/iprscan-20080502-16023160.nocrc
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Query sequence: KIAA0892
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                  25.6     0.0069   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/3     115   148 ..     1    34 []     5.0  1.4e+02
SM00028    2/3     387   420 ..     1    34 []     7.9       64
SM00028    3/3     467   500 ..     1    34 []    12.7       18

Alignments of top-scoring domains:
SM00028: domain 1 of 3, from 115 to 148: score 5.0, E = 1.4e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       ea + l ++y + +  d A   ++kA+++  +    
    KIAA0892   115    FEAASLLSELYCQENSVDAAKPLLRKAIQISQQT    148  

SM00028: domain 2 of 3, from 387 to 420: score 7.9, E = 64
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ +  lG+ + + +  d A++ ++ AL+l  +    
    KIAA0892   387    AQLHTLLGLYCVSVNCMDNAEAQFTTALRLTNHQ    420  

SM00028: domain 3 of 3, from 467 to 500: score 12.7, E = 18
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a a+y +G+  + +g+y+eA  ++++ L++       
    KIAA0892   467    AAAFYVRGLFSFFQGRYNEAKRFLRETLKMSNAE    500  

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