hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16092160/chunk_1/iprscan-20080502-16092160.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0896 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 360.1 3.3e-105 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 358.2 1.2e-104 1 PF02207.10.ls Putative zinc finger in N-recognin (UBR box) 100.0 6.5e-27 1 PF02207.10.fs Putative zinc finger in N-recognin (UBR box) 98.2 2.3e-26 1 PF00658.8.fs Poly-adenylate binding protein, unique domai 91.7 3.3e-26 1 PF00658.8.ls Poly-adenylate binding protein, unique domai 93.6 5.4e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02207.10.fs 1/1 1199 1266 .. 1 83 [] 98.2 2.3e-26 PF02207.10.ls 1/1 1199 1266 .. 1 83 [] 100.0 6.5e-27 PF00658.8.ls 1/1 2397 2471 .. 1 81 [] 93.6 5.4e-25 PF00658.8.fs 1/1 2397 2471 .. 1 81 [] 91.7 3.3e-26 PF00632.15.fs 1/1 2507 2820 .] 1 351 [] 358.2 1.2e-104 PF00632.15.ls 1/1 2507 2820 .] 1 351 [] 360.1 3.3e-105 Alignments of top-scoring domains: PF02207.10.fs: domain 1 of 1, from 1199 to 1266: score 98.2, E = 2.3e-26 *->klCghvEGfkpgEtiNQnlYrCkTCsldpGstcvlCyeCFrascHkg ++C+++ ++++E+iNQ +++C+TC+l s+c+ C+eC+r +cHkg KIAA0896 1199 DTCSFT--WTGAEHINQDIFECRTCGLLE-SLCC-CTECAR-VCHKG 1240 HdvlvslktsagsEGgiCDCGdkeAwnedlkCkahe<-* Hd ++lk+++++ ++CDC++k +kCk ++ KIAA0896 1241 HD--CKLKRTSPT--AYCDCWEK------CKCKTLI 1266 PF02207.10.ls: domain 1 of 1, from 1199 to 1266: score 100.0, E = 6.5e-27 *->klCghvEGfkpgEtiNQnlYrCkTCsldpGstcvlCyeCFrascHkg ++C+++ ++++E+iNQ +++C+TC+l s+c+ C+eC+r +cHkg KIAA0896 1199 DTCSFT--WTGAEHINQDIFECRTCGLLE-SLCC-CTECAR-VCHKG 1240 HdvlvslktsagsEGgiCDCGdkeAwnedlkCkahe<-* Hd ++lk+++++ ++CDC++k +kCk ++ KIAA0896 1241 HD--CKLKRTSPT--AYCDCWEK------CKCKTLI 1266 PF00658.8.ls: domain 1 of 1, from 2397 to 2471: score 93.6, E = 5.4e-25 *->eplnASdLAnatpekLnDhLsvqkQmLGErLYPkVeaktseeelAgK +++ + + + pe L ++Q+LGErLYP V+a+ ++ A K KIAA0896 2397 FRPASEGNPSDDPEP----LPAHRQALGERLYPRVQAM--QPAFASK 2437 ITGMLLEipnsElLhLLESdEaLkaKVnEAiaVL<-* ITGMLLE+ +++lL LL S +L+a+V+EA++ + KIAA0896 2438 ITGMLLELSPAQLLLLLASEDSLRARVDEAMELI 2471 PF00658.8.fs: domain 1 of 1, from 2397 to 2471: score 91.7, E = 3.3e-26 *->eplnASdLAnatpekLnDhLsvqkQmLGErLYPkVeaktseeelAgK +++ + + + pe L ++Q+LGErLYP V+a+ ++ A K KIAA0896 2397 FRPASEGNPSDDPEP----LPAHRQALGERLYPRVQAM--QPAFASK 2437 ITGMLLEipnsElLhLLESdEaLkaKVnEAiaVL<-* ITGMLLE+ +++lL LL S +L+a+V+EA++ + KIAA0896 2438 ITGMLLELSPAQLLLLLASEDSLRARVDEAMELI 2471 PF00632.15.fs: domain 1 of 1, from 2507 to 2820: score 358.2, E = 1.2e-104 *->tLlsrelf.....nPdygLFeysddtdvnesgyaedsytlqinPlss +++ +l ++++++ + LF ++ ++ +++P+++ KIAA0896 2507 SVVDMDLDdtddgDDNAPLF-------------YQPGKRGFYTPRPG 2540 esnpehlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleD ++ + +l++F++iGrilGl+l ++ l+++ ++r++ K LL g++v ++D KIAA0896 2541 KNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLL--GRKVNWHD 2588 lesvDPelynSLkwllendgdrhILLgs.ledveedLeLtFsveeessag ++++DP++y SL++l +++ s+++ v ++L F ++ KIAA0896 2589 FAFFDPVMYESLRQLILASQS------SdADAVFSAMDLAFAID------ 2626 fdpdasdf.GetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiek + ++++ +ve L+PnG nIpVT +N+ eYV++y+e+r+ e+ KIAA0896 2627 L-----CKeEGGGQVE-LIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQ 2670 QfeAFrkGFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkg +++A rkG+ +v+p+++L+ +++e+++lL+ G +e ++v++L+s+T +++ KIAA0896 2671 PLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGE-VNVQMLISFTSFND 2719 gYtedsp.l.ktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLq ++ e+ ++l ++ +wFW +ve+++ er++L++F+T+s+++P++ + KIAA0896 2720 ESGENAEkLlQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQP 2769 gpGsnGppkFtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLl +p++tI+ ++dd++LPtA+TC+ rL+ P YsSk+iL++kLl KIAA0896 2770 ------MPSITIR----PPDDQHLPTANTCISRLYVPLYSSKQILKQKLL 2809 lAIneeteGFgle<-* lAI+ t++Fg++ KIAA0896 2810 LAIK--TKNFGFV 2820 PF00632.15.ls: domain 1 of 1, from 2507 to 2820: score 360.1, E = 3.3e-105 *->tLlsrelf.....nPdygLFeysddtdvnesgyaedsytlqinPlss +++ +l ++++++ + LF ++ ++ +++P+++ KIAA0896 2507 SVVDMDLDdtddgDDNAPLF-------------YQPGKRGFYTPRPG 2540 esnpehlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleD ++ + +l++F++iGrilGl+l ++ l+++ ++r++ K LL g++v ++D KIAA0896 2541 KNTEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLL--GRKVNWHD 2588 lesvDPelynSLkwllendgdrhILLgs.ledveedLeLtFsveeessag ++++DP++y SL++l +++ s+++ v ++L F ++ KIAA0896 2589 FAFFDPVMYESLRQLILASQS------SdADAVFSAMDLAFAID------ 2626 fdpdasdf.GetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiek + ++++ +ve L+PnG nIpVT +N+ eYV++y+e+r+ e+ KIAA0896 2627 L-----CKeEGGGQVE-LIPNGVNIPVTPQNVYEYVRKYAEHRMLVVAEQ 2670 QfeAFrkGFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkg +++A rkG+ +v+p+++L+ +++e+++lL+ G +e ++v++L+s+T +++ KIAA0896 2671 PLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGE-VNVQMLISFTSFND 2719 gYtedsp.l.ktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLq ++ e+ ++l ++ +wFW +ve+++ er++L++F+T+s+++P++ + KIAA0896 2720 ESGENAEkLlQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQP 2769 gpGsnGppkFtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLl +p++tI+ ++dd++LPtA+TC+ rL+ P YsSk+iL++kLl KIAA0896 2770 ------MPSITIR----PPDDQHLPTANTCISRLYVPLYSSKQILKQKLL 2809 lAIneeteGFgle<-* lAI+ t++Fg++ KIAA0896 2810 LAIK--TKNFGFV 2820 //