hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16092160/chunk_1/iprscan-20080502-16092160.nocrc
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Query sequence: KIAA0896
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00119                                                 521.2   4.4e-152   1
SM00517                                                 125.7      5e-33   1
SM00396                                                 104.9    9.3e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00396    1/1    1199  1266 ..     1    79 []   104.9  9.3e-27
SM00517    1/1    2411  2474 ..     1    66 []   125.7    5e-33
SM00119    1/1    2454  2820 .]     1   407 []   521.2 4.4e-152

Alignments of top-scoring domains:
SM00396: domain 1 of 1, from 1199 to 1266: score 104.9, E = 9.3e-27
                   *->dvCtyvftggevinQhlYrCkTCaldpetcvlCsdCFrsncHkgHdv
                      d+C++++tg e+inQ++++C+TC+l + ++++C++C+r +cHkgHd 
    KIAA0896  1199    DTCSFTWTGAEHINQDIFECRTCGLLE-SLCCCTECAR-VCHKGHD- 1242 

                   lvslktsrgsGgiCDCGdkeAwnedlkCkahe<-*
                    ++lk+++++ ++CDC++k      +kCk ++   
    KIAA0896  1243 -CKLKRTSPT-AYCDCWEK------CKCKTLI    1266 

SM00517: domain 1 of 1, from 2411 to 2474: score 125.7, E = 5e-33
                   *->ppqeQkqmLGErLYPkVealepneelAgKITGMLLEMDnsElLhLLe
                      p++ ++q+LGErLYP+V+a++p  ++A+KITGMLLE+ +++lL+LL 
    KIAA0896  2411    PLPAHRQALGERLYPRVQAMQP--AFASKITGMLLELSPAQLLLLLA 2455 

                   speaLkaKVdEAleVLrsh<-*
                   s+++L+a+VdEA+e + +h   
    KIAA0896  2456 SEDSLRARVDEAMELIIAH    2474 

SM00119: domain 1 of 1, from 2454 to 2820: score 521.2, E = 4.4e-152
                   *->nsspddLkkrskeaLeIef..........v.vnehgvgEeglDgGGv
                        s+d L++r++ea+e++  ++++++ +++ ++++ + +e +++ + 
    KIAA0896  2454    LASEDSLRARVDEAMELIIahgrengadsIlDLGLVDSSEKVQENRK 2500 

                   trEFffllskelfnp....tdygLFryspndnaeksktiYigrlrylLfp
                   ++ +  +++++ ++++++++d+++++y+p+++               +f+
    KIAA0896  2501 RHGSSRSVVDMDLDDtddgDDNAPLFYQPGKR---------------GFY 2535 

                   nPsagfaneehlaavyFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkp
                    P++g ++e++l+  +Fr+iGr+lG++l++n+l++  ++r+++K LLg++
    KIAA0896  2536 TPRPGKNTEARLN--CFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRK 2583 

                   kgtdvtlhDleslDPelyksLvwLilvrrKleleeDlseeskslendite
                       v++hD++++DP++y+sL++Li           l+++s++ +++++ 
    KIAA0896  2584 ----VNWHDFAFFDPVMYESLRQLI-----------LASQSSDADAVFSA 2618 

                   veldmaLtFsivlesdfgevkvvELkpGGsnipVTeeNkkEYVhlvieyr
                     +d  L F+i+l++ ++++++vEL+p+G nipVT +N++EYV++++e+r
    KIAA0896  2619 --MD--LAFAIDLCK-EEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHR 2663 

                   lnkgvekqleAFreGFseVipeelLrylFdeeELeLLicGleeeidvddL
                   +    e++l+A+r+G+++V+p+++L++l ++e+++LL++G++ e++v++L
    KIAA0896  2664 MLVVAEQPLHAMRKGLLDVLPKNSLEDL-TAEDFRLLVNGCG-EVNVQML 2711 

                   ksnTeyrggYtensqti.rfkkwFWevvesFtneerrkLLqFVTGssrlP
                   +s+T++++++ en +++ +fk+wFW++ve++++ er++L++F+T+s++lP
    KIAA0896  2712 ISFTSFNDESGENAEKLlQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLP 2761 

                   ASvgGFaaLspsNGpqkFtIrkagsetlsdddrLPtAhTCfNrLkLPpYs
                   AS++GF++++      ++tIr+       dd++LPtA+TC++rL++P Ys
    KIAA0896  2762 ASEEGFQPMP------SITIRPP------DDQHLPTANTCISRLYVPLYS 2799 

                   SkeiLreKLLlAInegRiggeGFgls<-*
                   Sk+iL++KLLlAI+      ++Fg++   
    KIAA0896  2800 SKQILKQKLLLAIKT-----KNFGFV    2820 

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