hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16114194/chunk_1/iprscan-20080502-16114194.nocrc
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Query sequence: KIAA0897
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00536.20.fs SAM domain (Sterile alpha motif)                85.0    2.1e-24   3
PF07647.7.fs SAM domain (Sterile alpha motif)                76.3      1e-21   3
PF00536.20.ls SAM domain (Sterile alpha motif)                78.6    1.8e-20   2
PF07647.7.ls SAM domain (Sterile alpha motif)                73.2    7.9e-19   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07647.7.ls   1/3      60   129 ..     1    72 []    12.2    0.068
PF00536.20.fs   1/3      61   127 ..     1    65 []    19.4  4.4e-05
PF00536.20.ls   1/2      61   127 ..     1    65 []    21.4   0.0015
PF00536.20.fs   2/3     176   240 ..     1    65 []    55.2  1.2e-15
PF00536.20.ls   2/2     176   240 ..     1    65 []    57.2    5e-14
PF07647.7.ls   2/3     179   242 ..     1    72 []    16.2    0.026
PF07647.7.fs   2/3     185   242 ..    11    72 .]    22.0  8.8e-06
PF07647.7.ls   3/3     263   335 ..     1    72 []    44.7  2.9e-10
PF07647.7.fs   3/3     263   335 ..     1    72 []    42.7  7.1e-12

Alignments of top-scoring domains:
PF07647.7.ls: domain 1 of 3, from 60 to 129: score 12.2, E = 0.068
                   *->veswslesvaeWLe.siglegqYkdnFsdqgitglellllrlteedL
                        +w+ ++v +WLe  +g+ +    +  ++++ ++ ++   l+  + 
    KIAA0897    60    FAQWDGPTVVSWLElWVGM-PAWYVAACRANVKSGAIM-SALSDTEI 104  

                   aklalGitsvghRkkilkkiqelkqq<-*
                    + ++Gi+++ hR+k+  +iqe+      
    KIAA0897   105 -QREIGISNALHRLKLRLAIQEMVSL    129  

PF00536.20.fs: domain 1 of 3, from 61 to 127: score 19.4, E = 4.4e-05
                   *->dgwsfesVgeWLesi.gl.gqYidnFlsagyidgdtllqlteeDLed
                       +w+  +V  WLe   g+++ Y+ +  +a+ ++g  ++ l++ ++++
    KIAA0897    61    AQWDGPTVVSWLELWvGMpAWYVAAC-RANVKSGAIMSALSDTEIQR 106  

                   .lGvtllGHrkKIlssIqgLk<-*
                   ++G+ ++ Hr+K+ ++Iq +    
    KIAA0897   107 eIGISNALHRLKLRLAIQEMV    127  

PF00536.20.ls: domain 1 of 2, from 61 to 127: score 21.4, E = 0.0015
                   *->dgwsfesVgeWLesi.gl.gqYidnFlsagyidgdtllqlteeDLed
                       +w+  +V  WLe   g+++ Y+ +  +a+ ++g  ++ l++ ++++
    KIAA0897    61    AQWDGPTVVSWLELWvGMpAWYVAAC-RANVKSGAIMSALSDTEIQR 106  

                   .lGvtllGHrkKIlssIqgLk<-*
                   ++G+ ++ Hr+K+ ++Iq +    
    KIAA0897   107 eIGISNALHRLKLRLAIQEMV    127  

PF00536.20.fs: domain 2 of 3, from 176 to 240: score 55.2, E = 1.2e-15
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l
                      d ++ +   eWL s+gl+qY++ F +  ++d ++l +lt+ DL+ +l
    KIAA0897   176    DMNHEWIGNEWLPSLGLPQYRSYF-MECLVDARMLDHLTKKDLRVhL 221  

                   GvtllGHrkKIlssIqgLk<-*
                   +++   Hr  +++ I  Lk   
    KIAA0897   222 KMVDSFHRTSLQYGIMCLK    240  

PF00536.20.ls: domain 2 of 2, from 176 to 240: score 57.2, E = 5e-14
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLed.l
                      d ++ +   eWL s+gl+qY++ F +  ++d ++l +lt+ DL+ +l
    KIAA0897   176    DMNHEWIGNEWLPSLGLPQYRSYF-MECLVDARMLDHLTKKDLRVhL 221  

                   GvtllGHrkKIlssIqgLk<-*
                   +++   Hr  +++ I  Lk   
    KIAA0897   222 KMVDSFHRTSLQYGIMCLK    240  

PF07647.7.ls: domain 2 of 3, from 179 to 242: score 16.2, E = 0.026
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                       e   +    eWL s+gl +qY+ +F+++ ++  ++l  +lt  dL 
    KIAA0897   179    HEWIGN----EWLPSLGL-PQYRSYFMECLVDA-RML-DHLTKKDL- 217  

                   klalGitsvghRkkilkkiqelkqq<-*
                     +l++ +  hR  +  +i +lk     
    KIAA0897   218 RVHLKMVDSFHRTSLQYGIMCLKRL    242  

PF07647.7.fs: domain 2 of 3, from 185 to 242: score 22.0, E = 8.8e-06
                   *->eWLesiglegqYkdnFsdqgitglellllrlteedLaklalGitsvg
                      eWL s+gl +qY+ +F+++ ++  ++l  +lt  dL   +l++ +  
    KIAA0897   185    EWLPSLGL-PQYRSYFMECLVDA-RML-DHLTKKDL-RVHLKMVDSF 227  

                   hRkkilkkiqelkqq<-*
                   hR  +  +i +lk     
    KIAA0897   228 HRTSLQYGIMCLKRL    242  

PF07647.7.ls: domain 3 of 3, from 263 to 335: score 44.7, E = 2.9e-10
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL
                      v +w++++v +W++sigl ++Y+ n+ + g++g+ l l++++++++L
    KIAA0897   263    VLVWTNDQVVHWVQSIGL-RDYAGNLHESGVHGALLALdENFDHNTL 308  

                   a.klalGitsvghRkkilkkiqelkqq<-*
                   a +l+++ ++++ R+ + +++++l+     
    KIAA0897   309 AlILQIPTQNTQARQVMEREFNNLLAL    335  

PF07647.7.fs: domain 3 of 3, from 263 to 335: score 42.7, E = 7.1e-12
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglelll.lrlteedL
                      v +w++++v +W++sigl ++Y+ n+ + g++g+ l l++++++++L
    KIAA0897   263    VLVWTNDQVVHWVQSIGL-RDYAGNLHESGVHGALLALdENFDHNTL 308  

                   a.klalGitsvghRkkilkkiqelkqq<-*
                   a +l+++ ++++ R+ + +++++l+     
    KIAA0897   309 AlILQIPTQNTQARQVMEREFNNLLAL    335  

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