# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk09541.fasta.huge -Q ../query/KIAA0898.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0898, 979 aa vs ./tmplib.23663 library 1986526 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 7.3871+/-0.00639; mu= 4.7178+/- 0.435 mean_var=166.9621+/-39.211, 0's: 0 Z-trim: 9 B-trim: 5 in 1/39 Lambda= 0.099258 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1098 ( 504 res) hk07318 ( 504) 222 44.3 4.7e-05 KIAA0517 ( 792 res) hg00752 ( 792) 196 40.7 0.00087 >>KIAA1098 ( 504 res) hk07318 (504 aa) initn: 93 init1: 93 opt: 222 Z-score: 182.6 bits: 44.3 E(): 4.7e-05 Smith-Waterman score: 231; 23.427% identity (53.846% similar) in 286 aa overlap (2-271:6-283) 10 20 30 40 50 KIAA08 AEPAGRQRPRREPEAMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIR :::.: .: :.. : .:. : . : .:.. .::: . .:.. : .:. KIAA10 KFRAPEPAARAM-ERSPDVSPGPS-RSFKEELLCAVCYDPFRDA-VTLRCGHNFCRGCVS 10 20 30 40 50 60 70 80 90 100 110 KIAA08 R-WLTEQRAQCPHCR---APLQLRELVNCRWAEEVTQQL-DTLQLCSLTKHEENEKDKCE : : .. :: :. .: .:: .: . : . : . . :... .. :. KIAA10 RCWEVQVSPTCPVCKDRASPADLR--TNHTLNNLVEKLLREEAEGARWTSYRFSR--VCR 60 70 80 90 100 110 120 130 140 150 160 KIAA08 NHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLR----- :. .::.:: :. .: .: : :: .:. . .. .: . :: KIAA10 LHRGQLSLFCLEDKELLCCSCQA-DPRHQGHRVQPVKDTAHDFRAKCRNMEHALREKAKA 120 130 140 150 160 170 170 180 190 200 210 220 KIAA08 ----RRLMELISLVQEVERNVEAVRNAKD-ERVRE-IRNAVEMMIARLDTQLKNKLITLM :: .: :. ..:: : .. ...:: .: . .. . . ..: . KIAA10 FWAMRRSYEAIAKHNQVEAAWLEGRIRQEFDKLREFLRVEEQAILDAMAEETRQKQLLAD 180 190 200 210 220 230 230 240 250 260 270 280 KIAA08 GQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVP . .::.:::.: ..... ... . : :....:. .: .. .:. KIAA10 EKMKQLTEETEVLAHEIERLQMEMKEDDVSFLMKHKSRKRRLFCTMEPEPVQPGMLIDVC 240 250 260 270 280 290 290 300 310 320 330 340 KIAA08 PDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYL KIAA10 KYLGSLQYRVWKKMLASVESVPFSFDPNTAAGWLSVSDDLTSVTNHGYRVQVENPERFSS 300 310 320 330 340 350 >>KIAA0517 ( 792 res) hg00752 (792 aa) initn: 144 init1: 91 opt: 196 Z-score: 159.9 bits: 40.7 E(): 0.00087 Smith-Waterman score: 268; 23.288% identity (54.110% similar) in 292 aa overlap (3-269:43-328) 10 20 30 KIAA08 AEPAGRQRPRREPEAMDEQSVESIAEVFR-CF : .: : . :..: . : : KIAA05 IGGGWLWSSMHRSGRYGTQQQRAGSKTAGPPCQWSRMASEGTNIPSPVVRQIDKQFLICS 20 30 40 50 60 70 40 50 60 70 80 KIAA08 ICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRA--QCPHCRAPLQLRE--LVNCRWAEEV ::.:. .. .. : : . : :.. .. . .:: :: : : .. . . KIAA05 ICLERYKNPKVLP-CLHTFCERCLQNYIPAHSLTLSCPVCRQTSILPEKGVAALQNNFFI 80 90 100 110 120 130 90 100 110 120 130 KIAA08 TQQLDTLQLCSLTKHEEN------------EKDKCENHHEK-LSVFCWTCKKCICHQCAL :. .:.:: .. ::. . .: :: . . .: .:. .:..:. KIAA05 TNLMDVLQRTPGSNAEESSILETVTAVAAGKPLSCPNHDGNVMEFYCQSCETAMCRECT- 140 150 160 170 180 190 140 150 160 170 180 190 KIAA08 WGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERV : :. : :: .. ::: .... .. . .:: :. : .: . . .. . : : : KIAA05 -EGEHAEHPTVPLKDVVEQHKASLQVQLDAVNKRLPEIDSALQFISEIIHQLTNQKASIV 200 210 220 230 240 200 210 220 230 240 KIAA08 REIRNAVEMMIARLDTQLKNKLITL---MGQKTSLTQETELLESLLQEVEHQLRSCSK-- .:... . . :... . :. : .: : .. : :..::: : ...:::. KIAA05 DDIHSTFDELQKTLNVRKSVLLMELEVNYGLKHKVLQSQ--LDTLLQGQE-SIKSCSNFT 250 260 270 280 290 300 250 260 270 280 290 300 KIAA08 SELISKSSE--ILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQR .. .....: .:.. .:. .: KIAA05 AQALNHGTETEVLLVKKQMSEKLNELADQDFPLHPRENDQLDFIVETEGLKKSIHNLGTI 310 320 330 340 350 360 979 residues in 1 query sequences 1986526 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:20:36 2008 done: Thu Dec 18 15:20:37 2008 Total Scan time: 0.660 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]