hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16132961/chunk_1/iprscan-20080502-16132961.nocrc
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Query sequence: KIAA0898
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00643.14.fs B-box zinc finger                               63.4    6.8e-16   2
PF00643.14.ls B-box zinc finger                               63.1    8.6e-16   1
PF00917.16.fs MATH domain                                     20.5      4e-06   1
PF00917.16.ls MATH domain                                     22.3     0.0011   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00643.14.fs   2/2     105   147 ..     1    50 []    61.2    3e-15
PF00643.14.ls   1/1     105   147 ..     1    50 []    63.1  8.6e-16
PF00917.16.fs   1/1     298   406 ..     1   138 [.    20.5    4e-06
PF00917.16.ls   1/1     298   420 ..     1   150 []    22.3   0.0011

Alignments of top-scoring domains:
PF00643.14.fs: domain 2 of 2, from 105 to 147: score 61.2, E = 3e-15
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrls.geHqanklfrgHt
                       ++++C++H+  ekls+FC+++ +++C++C+l++g+H       gHt
    KIAA0898   105    NEKDKCENHH--EKLSVFCWTCKKCICHQCALWgGMH------GGHT 143  

                   vvpl<-*
                   ++pl   
    KIAA0898   144 FKPL    147  

PF00643.14.ls: domain 1 of 1, from 105 to 147: score 63.1, E = 8.6e-16
                   *->ekervCpeHgdneklslFCedDgqlLCvvCrls.geHqanklfrgHt
                       ++++C++H+  ekls+FC+++ +++C++C+l++g+H       gHt
    KIAA0898   105    NEKDKCENHH--EKLSVFCWTCKKCICHQCALWgGMH------GGHT 143  

                   vvpl<-*
                   ++pl   
    KIAA0898   144 FKPL    147  

PF00917.16.fs: domain 1 of 1, from 298 to 406: score 20.5, E = 4e-06
                   *->iknfSkikkegesyytspyeerfnipWrllriyrngggs.rhgkflg
                        nfS +++  + +y+ p   + +++Wr l++y++g+g  r g +l+
    KIAA0898   298    LENFSTLRQRADPVYS-PPLQVSGLCWR-LKVYPDGNGVvR-GYYLS 341  

                   lyLhClkeekdsetsenlkWsietefqlklvsdnGksirRmssvtlskki
                   ++L +  +         l+ +   e++  +v ++ ++         +k+i
    KIAA0898   342 VFLELSAG---------LPETSKYEYRVEMVHQSCND--------PTKNI 374  

                   kdainnshtFdkptkgeGwgksGykkFisWddleddyrgylv<-*
                    +   +   F+   +++G+ +     F ++d l +  +gyl+   
    KIAA0898   375 IR--EFASDFEVG-ECWGYNR-----FFRLDLLAN--EGYLN    406  

PF00917.16.ls: domain 1 of 1, from 298 to 420: score 22.3, E = 0.0011
                   *->iknfSkikkegesyytspyeerfnipWrllriyrngggs.rhgkflg
                        nfS +++  + +y+ p   + +++Wr l++y++g+g  r g +l+
    KIAA0898   298    LENFSTLRQRADPVYS-PPLQVSGLCWR-LKVYPDGNGVvR-GYYLS 341  

                   lyLhClkeekdsetsenlkWsietefqlklvsdnGksirRmssvtlskki
                   ++L +  +         l+ +   e++  +v ++ ++         +k+i
    KIAA0898   342 VFLELSAG---------LPETSKYEYRVEMVHQSCND--------PTKNI 374  

                   kdainnshtFdkptkgeGwgksGykkFisWddleddyrgylv..dDsiii
                    +   +   F+   +++G+ +     F ++d l +  +gyl++++D++i+
    KIAA0898   375 IR--EFASDFEVG-ECWGYNR-----FFRLDLLAN--EGYLNpqNDTVIL 414  

                   EaeVkI<-*
                      V     
    KIAA0898   415 RFQVRS    420  

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