hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16132961/chunk_1/iprscan-20080502-16132961.nocrc
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Query sequence: KIAA0898
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00502                                                 119.3    4.4e-31   1
SM00061                                                  60.2    2.6e-13   1
SM00336                                                  55.6    6.3e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00336    1/1     105   147 ..     1    51 []    55.6  6.3e-12
SM00502    1/1     147   269 ..     1   132 []   119.3  4.4e-31
SM00061    1/1     296   399 ..     1   123 []    60.2  2.6e-13

Alignments of top-scoring domains:
SM00336: domain 1 of 1, from 105 to 147: score 55.6, E = 6.3e-12
                   *->eraplCeeHgdeepaeffCveedgallCrdCdea.geHqanklfrgH
                       ++++Ce+H+  e++ +fC +++ +++C +C +++g+H      +gH
    KIAA0898   105    NEKDKCENHH--EKLSVFC-WTCKKCICHQCALWgGMH------GGH 142  

                   rvvll<-*
                   ++++l   
    KIAA0898   143 TFKPL    147  

SM00502: domain 1 of 1, from 147 to 269: score 119.3, E = 4.4e-31
                   *->qreaLeelleklrkkaeelekalkqldsiiqevegGqvdenaeevea
                      + e++e++++k++++ ++l+++l++l+s++qeve     +n e v++
    KIAA0898   147    LAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVE-----RNVEAVRN 188  

                   eikaafdeLrnaLnerkkqLledLeevkenklkkLeqQlesltqkqekle
                     +++++e+rna++    +++++L+++ +nkl++L+ Q++sltq +e le
    KIAA0898   189 AKDERVREIRNAVE----MMIARLDTQLKNKLITLMGQKTSLTQETELLE 234  

                   hainfaeeaLnsgdptelLlskkliierlqellkq<-*
                   ++++ +e++L+s++++el++++ +i +++q+++++   
    KIAA0898   235 SLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRK    269  

SM00061: domain 1 of 1, from 296 to 399: score 60.2, E = 2.6e-13
                   *->vlshtfknvSkfKLateegesyfSpseehkggfnipWrlkikrkG..
                      +  ++f+ ++         + ++Sp+  +    +++Wrlk++++G++
    KIAA0898   296    FVLENFSTLR------QRADPVYSPPLQV---SGLCWRLKVYPDGng 333  

                   .gkngflglyLhCekeeceerlevkWsieaeftlkLvsqnGksl.rsvir
                     ++ +l+++L    ++ e     + + e ++++   s+n + +++    
    KIAA0898   334 vVRGYYLSVFLELSAGLPE-----TSKYEYRVEMVHQSCNDPTKnI---- 374  

                   hvkfaskkdthvFekpsgwGfskFisWddL<-*
                         + + + Fe +++wG+++F+++d L   
    KIAA0898   375 -----IREFASDFEVGECWGYNRFFRLDLL    399  

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