hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16300660/chunk_1/iprscan-20080502-16300660.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0908 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07156.4.fs Prenylcysteine lyase 955.2 2.8e-294 1 PF07156.4.ls Prenylcysteine lyase 957.2 5.8e-285 1 PF07992.4.fs Pyridine nucleotide-disulphide oxidor 36.4 2.1e-09 1 PF01266.14.fs FAD dependent oxidoreductase 26.3 2.6e-07 1 PF01593.14.fs Flavin containing amine oxidoreductas 21.1 4.4e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07992.4.fs 1/1 37 74 .. 1 44 [. 36.4 2.1e-09 PF01266.14.fs 1/1 37 74 .. 1 35 [. 26.3 2.6e-07 PF01593.14.fs 1/1 45 109 .. 1 73 [. 21.1 4.4e-06 PF07156.4.ls 1/1 129 506 .] 1 390 [] 957.2 5.8e-285 PF07156.4.fs 1/1 129 506 .] 1 390 [] 955.2 2.8e-294 Alignments of top-scoring domains: PF07992.4.fs: domain 1 of 1, from 37 to 74: score 36.4, E = 2.1e-09 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->dvvIIGgGpAGlaAAirlaralgefglkvalitEEkekeftpgg<-* +++IIG+G +G++AA +l++++g ++ k+ l+ E+e+ gg KIAA0908 37 KIAIIGAGIGGTSAAYYLRQKFG-KDVKIDLF--EREEV---GG 74 PF01266.14.fs: domain 1 of 1, from 37 to 74: score 26.3, E = 2.6e-07 *->DVvVIGGGivGlstAyhLak...rGlsVtllErgdigs<-* ++++IG+Gi G s+Ay+L ++ + ++ l+Er+++g+ KIAA0908 37 KIAIIGAGIGGTSAAYYLRQkfgKDVKIDLFEREEVGG 74 PF01593.14.fs: domain 1 of 1, from 45 to 109: score 21.1, E = 4.4e-06 *->laGLaAAreLlraGfqdVtv.lEArdRvGGRirtvrfkggdadgfli + G +AA++L +++ +dV ++l r+ vGGR+ t++++ g+ + KIAA0908 45 IGGTSAAYYLRQKFGKDVKIdLFEREEVGGRLATMMVQ-----GQEY 86 elGaqwfhgaypnllnlllelglelgl<-* e G++++ ++l ++++ +++lgl KIAA0908 87 EAGGSVI----HPLNLHMKRFVKDLGL 109 PF07156.4.ls: domain 1 of 1, from 129 to 506: score 957.2, E = 5.8e-285 *->leetdwfiiNvlkLvwrYGlslLRMkmwvEdvldkFmrIYrylehgy +ee++wfiiNv+kLvwrYG+++LRM+mwvEdvldkFmrIYry++h+y KIAA0908 129 FEESNWFIINVIKLVWRYGFQFLRMHMWVEDVLDKFMRIYRYQSHDY 175 aFsnVEelLkalGgddfvnltkltlqEkLseaGlsqrFlnElVaavlrvn aFs+VE+lL+alGgddf++++++tl+E+L++aG+s++FlnE++a+v+rvn KIAA0908 176 AFSSVEKLLHALGGDDFLGMLNRTLLETLQKAGFSEKFLNEMIAPVMRVN 225 YGQStdinafAGAvSLagAdggLWSVEGGNklvcSgLlqaskvNlHIhgk YGQStdinaf+GAvSL+++d+gLW+VEGGNklvcSgLlqask+Nl I+g+ KIAA0908 226 YGQSTDINAFVGAVSLSCSDSGLWAVEGGNKLVCSGLLQASKSNL-ISGS 274 VesIEEKTkTkyleNgkkLYeVvYkigkgnssDfYDiVVVATPLnLDrsm V++IEEKTkTky++N++k+YeVvY+ig++++sDfYDiV+VATPL +r+m KIAA0908 275 VMYIEEKTKTKYTGNPTKMYEVVYQIGTETRSDFYDIVLVATPL--NRKM 322 sNitfanFdPpIeefkrkyQhtvttlVkGeLNssyFGvrpeddfpLatil sNitf+nFdPpIeef+++yQh+vttlVkGeLN+s+F++rp+d+f+L+t+l KIAA0908 323 SNITFLNFDPPIEEFHQYYQHIVTTLVKGELNTSIFSSRPIDKFGLNTVL 372 tlDdpdlFinsisIvPvtelkserrKeGpppqsqgaaVyKvfsrkpLtks t+D++dlFinsi+IvP++++k+++++ +++g++V+K+fs+++Ltk+ KIAA0908 373 TTDNSDLFINSIGIVPSVREKEDPEP-----STDGTYVWKIFSQETLTKA 417 QLdkLFesydyvvkkeWDlAYPkYsapeklpsfiLhDHrLyYLNaiEgAA Q+ kLF+sydy+vkk+W lAYP+Y++pek+ps+iLhD rLyYLN+iE+AA KIAA0908 418 QILKLFLSYDYAVKKPW-LAYPHYKPPEKCPSIILHD-RLYYLNGIECAA 465 ScMElsAiAAkNiAlLiyeRwngkedlssiDqddLmhkLkteL<-* S+ME+sAiAA+N+AlL+y+Rwng++d+ iDqd+L++kLkteL KIAA0908 466 SAMEMSAIAAHNAALLAYHRWNGHTDM--IDQDGLYEKLKTEL 506 PF07156.4.fs: domain 1 of 1, from 129 to 506: score 955.2, E = 2.8e-294 *->leetdwfiiNvlkLvwrYGlslLRMkmwvEdvldkFmrIYrylehgy +ee++wfiiNv+kLvwrYG+++LRM+mwvEdvldkFmrIYry++h+y KIAA0908 129 FEESNWFIINVIKLVWRYGFQFLRMHMWVEDVLDKFMRIYRYQSHDY 175 aFsnVEelLkalGgddfvnltkltlqEkLseaGlsqrFlnElVaavlrvn aFs+VE+lL+alGgddf++++++tl+E+L++aG+s++FlnE++a+v+rvn KIAA0908 176 AFSSVEKLLHALGGDDFLGMLNRTLLETLQKAGFSEKFLNEMIAPVMRVN 225 YGQStdinafAGAvSLagAdggLWSVEGGNklvcSgLlqaskvNlHIhgk YGQStdinaf+GAvSL+++d+gLW+VEGGNklvcSgLlqask+Nl I+g+ KIAA0908 226 YGQSTDINAFVGAVSLSCSDSGLWAVEGGNKLVCSGLLQASKSNL-ISGS 274 VesIEEKTkTkyleNgkkLYeVvYkigkgnssDfYDiVVVATPLnLDrsm V++IEEKTkTky++N++k+YeVvY+ig++++sDfYDiV+VATPL +r+m KIAA0908 275 VMYIEEKTKTKYTGNPTKMYEVVYQIGTETRSDFYDIVLVATPL--NRKM 322 sNitfanFdPpIeefkrkyQhtvttlVkGeLNssyFGvrpeddfpLatil sNitf+nFdPpIeef+++yQh+vttlVkGeLN+s+F++rp+d+f+L+t+l KIAA0908 323 SNITFLNFDPPIEEFHQYYQHIVTTLVKGELNTSIFSSRPIDKFGLNTVL 372 tlDdpdlFinsisIvPvtelkserrKeGpppqsqgaaVyKvfsrkpLtks t+D++dlFinsi+IvP++++k+++++ +++g++V+K+fs+++Ltk+ KIAA0908 373 TTDNSDLFINSIGIVPSVREKEDPEP-----STDGTYVWKIFSQETLTKA 417 QLdkLFesydyvvkkeWDlAYPkYsapeklpsfiLhDHrLyYLNaiEgAA Q+ kLF+sydy+vkk+W lAYP+Y++pek+ps+iLhD rLyYLN+iE+AA KIAA0908 418 QILKLFLSYDYAVKKPW-LAYPHYKPPEKCPSIILHD-RLYYLNGIECAA 465 ScMElsAiAAkNiAlLiyeRwngkedlssiDqddLmhkLkteL<-* S+ME+sAiAA+N+AlL+y+Rwng++d+ iDqd+L++kLkteL KIAA0908 466 SAMEMSAIAAHNAALLAYHRWNGHTDM--IDQDGLYEKLKTEL 506 //