hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16314348/chunk_1/iprscan-20080502-16314348.nocrc
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Query sequence: KIAA0909
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03859.7.ls CG-1 domain                                    278.7      1e-80   1
PF03859.7.fs CG-1 domain                                    276.8    1.1e-80   1
PF01833.14.fs IPT/TIG domain                                  41.3    2.8e-11   1
PF00612.17.fs IQ calmodulin-binding motif                     38.5      2e-10   4
PF01833.14.ls IPT/TIG domain                                  43.0    9.2e-10   1
PF00612.17.ls IQ calmodulin-binding motif                     36.8    6.7e-08   4
PF00023.20.fs Ankyrin repeat                                  20.1    0.00012   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03859.7.ls   1/1      66   182 ..     1   121 []   278.7    1e-80
PF03859.7.fs   1/1      66   182 ..     1   121 []   276.8  1.1e-80
PF01833.14.fs   1/1     565   646 ..     1   104 []    41.3  2.8e-11
PF01833.14.ls   1/1     565   646 ..     1   104 []    43.0  9.2e-10
PF00023.20.fs   1/3     742   762 ..     1    21 [.     9.8    0.098
PF00023.20.fs   2/3     787   807 ..     1    21 [.     9.1     0.15
PF00023.20.fs   3/3     821   841 ..     1    21 [.     1.3       23
PF00612.17.ls   3/4    1134  1154 ..     1    21 []    19.3    0.012

Alignments of top-scoring domains:
PF03859.7.ls: domain 1 of 1, from 66 to 182: score 278.7, E = 1e-80
                   *->LlkEAqhRWlrpeeivaiLqnfekfeellttsPktRPqsGSLlLFnR
                      L+ E + RW+++eei+ +L++fek+ e+l+ +PktRPq+GS++L+nR
    KIAA0909    66    LPPE-RLRWNTNEEIASYLITFEKHDEWLSCAPKTRPQNGSIILYNR 111  

                   KvLkYFRKDGHnWRKKkDGKTirEaHekLKVGsvevLhCYYaHGeanptF
                   K++kY RKDG+ W+K+kDGKT+rE+H+kLKV++ e+L+++Y+H+++ ptF
    KIAA0909   112 KKVKY-RKDGYLWKKRKDGKTTREDHMKLKVQGMECLYGCYVHSSIVPTF 160  

                   qRRcYWlLeeelehIVLVHYldVk<-*
                   +RRcYWlL++  ++IVLVHYl+V+   
    KIAA0909   161 HRRCYWLLQN--PDIVLVHYLNVP    182  

PF03859.7.fs: domain 1 of 1, from 66 to 182: score 276.8, E = 1.1e-80
                   *->LlkEAqhRWlrpeeivaiLqnfekfeellttsPktRPqsGSLlLFnR
                      L+ E + RW+++eei+ +L++fek+ e+l+ +PktRPq+GS++L+nR
    KIAA0909    66    LPPE-RLRWNTNEEIASYLITFEKHDEWLSCAPKTRPQNGSIILYNR 111  

                   KvLkYFRKDGHnWRKKkDGKTirEaHekLKVGsvevLhCYYaHGeanptF
                   K++kY RKDG+ W+K+kDGKT+rE+H+kLKV++ e+L+++Y+H+++ ptF
    KIAA0909   112 KKVKY-RKDGYLWKKRKDGKTTREDHMKLKVQGMECLYGCYVHSSIVPTF 160  

                   qRRcYWlLeeelehIVLVHYldVk<-*
                   +RRcYWlL++  ++IVLVHYl+V+   
    KIAA0909   161 HRRCYWLLQN--PDIVLVHYLNVP    182  

PF01833.14.fs: domain 1 of 1, from 565 to 646: score 41.3, E = 2.8e-11
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                       +It++sP+++  +GG  + itG    ++            e+ +++
    KIAA0909   565    STITDFSPEWSYPEGGVKVLITGPWTEAA------------EHYSCV 599  

                   fggtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdggg.sgdgr
                   f+ ++vp+ +++      ++C++P++  g      v ++v g +++    
    KIAA0909   600 FDHIAVPASLVQPGV---LRCYCPAHEvGL-----VSLQVAGREgP---- 637  

                   ssspvtFtY<-*
                    s++v F+Y   
    KIAA0909   638 LSASVLFEY    646  

PF01833.14.ls: domain 1 of 1, from 565 to 646: score 43.0, E = 9.2e-10
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                       +It++sP+++  +GG  + itG    ++            e+ +++
    KIAA0909   565    STITDFSPEWSYPEGGVKVLITGPWTEAA------------EHYSCV 599  

                   fggtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdggg.sgdgr
                   f+ ++vp+ +++      ++C++P++  g      v ++v g +++    
    KIAA0909   600 FDHIAVPASLVQPGV---LRCYCPAHEvGL-----VSLQVAGREgP---- 637  

                   ssspvtFtY<-*
                    s++v F+Y   
    KIAA0909   638 LSASVLFEY    646  

PF00023.20.fs: domain 1 of 3, from 742 to 762: score 9.8, E = 0.098
                   *->dGfTPLHlAalrgnlevvklL<-*
                       G++ LHlAa  g++++++ L   
    KIAA0909   742    RGMSLLHLAAAQGYARLIETL    762  

PF00023.20.fs: domain 2 of 3, from 787 to 807: score 9.1, E = 0.15
                   *->dGfTPLHlAalrgnlevvklL<-*
                        +TPL++A+  g+le + lL   
    KIAA0909   787    FSCTPLMWACALGHLEAAVLL    807  

PF00023.20.fs: domain 3 of 3, from 821 to 841: score 1.3, E = 23
                   *->dGfTPLHlAalrgnlevvklL<-*
                       G+ PL +A +rg+++++++L   
    KIAA0909   821    LGRLPLSVAHSRGHVRLARCL    841  

PF00612.17.ls: domain 3 of 4, from 1134 to 1154: score 19.3, E = 0.012
                   *->rraaikIQaawRGylaRkryk<-*
                      ++aai+IQ+ +R y   kr++   
    KIAA0909  1134    TQAAILIQSKFRSYYEQKRFQ    1154 

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