hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16465283/chunk_1/iprscan-20080502-16465283.nocrc
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Query sequence: KIAA0918
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                            114.1    3.6e-31  11
PF00560.23.fs Leucine Rich Repeat                             94.0    4.1e-25  10
PF01462.9.ls Leucine rich repeat N-terminal domain           24.3    0.00041   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   3/11    138   160 ..     1    24 []    12.5      1.2
PF00560.23.fs   3/10    162   184 ..     1    24 []    12.6    0.021
PF00560.23.ls   4/11    162   184 ..     1    24 []    14.5     0.36
PF00560.23.ls   6/11    209   229 ..     1    24 []     9.4      4.6
PF01462.9.ls   2/2     381   414 ..     1    34 []    22.6   0.0013
PF00560.23.ls   7/11    442   464 ..     1    24 []    11.6      1.8
PF00560.23.fs   7/10    466   488 ..     1    24 []    14.9   0.0049
PF00560.23.ls   8/11    466   488 ..     1    24 []    16.8    0.072
PF00560.23.ls   9/11    490   512 ..     1    24 []    10.9      2.4
PF00560.23.fs   9/10    514   536 ..     1    24 []    12.3    0.025
PF00560.23.ls  10/11    514   536 ..     1    24 []    14.2     0.44
PF00560.23.ls  11/11    537   557 ..     1    24 []     9.2      4.9

Alignments of top-scoring domains:
PF00560.23.ls: domain 3 of 11, from 138 to 160: score 12.5, E = 1.2
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L+ L+L++ N +l+  l ++++ +l   
    KIAA0918   138    GLRRLHLNN-N-KLE-LLRDDtFlGL    160  

PF00560.23.fs: domain 3 of 10, from 162 to 184: score 12.6, E = 0.021
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nLe+L +++ N  ++  ++++++++l   
    KIAA0918   162    NLEYLQVDY-N-YIS-VIEPNaFgKL    184  

PF00560.23.ls: domain 4 of 11, from 162 to 184: score 14.5, E = 0.36
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nLe+L +++ N  ++  ++++++++l   
    KIAA0918   162    NLEYLQVDY-N-YIS-VIEPNaFgKL    184  

PF00560.23.ls: domain 6 of 11, from 209 to 229: score 9.4, E = 4.6
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                       L++LdL+g N +l + lp  ++ l   
    KIAA0918   209    PLTHLDLRG-N-RL-KLLPY-VgLL    229  

PF01462.9.ls: domain 2 of 2, from 381 to 414: score 22.6, E = 0.0013
                   *->aCpapCtCser.ytdglvVdCsgrgLtvavPrdlP<-*
                       Cp  C C  +  + gl+V+C++r+   ++    P   
    KIAA0918   381    ECPTACSCNLQiSDLGLNVNCQERKIE-SIAELQP    414  

PF00560.23.ls: domain 7 of 11, from 442 to 464: score 11.6, E = 1.8
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                       L  L+L++ N +++  +++ ++++l   
    KIAA0918   442    GLDLLHLGN-N-RIS-MIQDRaFgDL    464  

PF00560.23.fs: domain 7 of 10, from 466 to 488: score 14.9, E = 0.0049
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL+ L+L+g N +++  l+++ + +l   
    KIAA0918   466    NLRRLYLNG-N-RIE-RLSPElFyGL    488  

PF00560.23.ls: domain 8 of 11, from 466 to 488: score 16.8, E = 0.072
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL+ L+L+g N +++  l+++ + +l   
    KIAA0918   466    NLRRLYLNG-N-RIE-RLSPElFyGL    488  

PF00560.23.ls: domain 9 of 11, from 490 to 512: score 10.9, E = 2.4
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L++L L++ N  + ++++s++++     
    KIAA0918   490    SLQYLFLQY-N-LI-REIQSGtFdPV    512  

PF00560.23.fs: domain 9 of 10, from 514 to 536: score 12.3, E = 0.025
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL+ L L++ N  l+  +ps+ +++l   
    KIAA0918   514    NLQLLFLNN-N-LLQ-AMPSGvFsGL    536  

PF00560.23.ls: domain 10 of 11, from 514 to 536: score 14.2, E = 0.44
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      nL+ L L++ N  l+  +ps+ +++l   
    KIAA0918   514    NLQLLFLNN-N-LLQ-AMPSGvFsGL    536  

PF00560.23.ls: domain 11 of 11, from 537 to 557: score 9.2, E = 4.9
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L  L+L++ N ++t slp+  ++l   
    KIAA0918   537    TLLRLNLRS-N-HFT-SLPV-SgVL    557  

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