hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17001541/chunk_1/iprscan-20080502-17001541.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0926 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05729.3.fs NACHT domain 271.2 5.4e-80 1 PF05729.3.ls NACHT domain 273.1 5.2e-79 1 PF02758.6.fs PAAD/DAPIN/Pyrin domain 106.0 1e-28 2 PF02758.6.ls PAAD/DAPIN/Pyrin domain 104.8 2.3e-28 1 PF00619.12.ls Caspase recruitment domain 93.2 7.3e-25 1 PF00619.12.fs Caspase recruitment domain 91.2 1.2e-24 1 PF00560.23.ls Leucine Rich Repeat 42.2 1.6e-09 6 PF00560.23.fs Leucine Rich Repeat 31.0 2e-07 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02758.6.ls 1/1 23 106 .. 1 83 [] 104.8 2.3e-28 PF02758.6.fs 1/2 23 106 .. 1 83 [] 102.8 9.3e-28 PF05729.3.ls 1/1 346 515 .. 1 205 [] 273.1 5.2e-79 PF05729.3.fs 1/1 346 515 .. 1 205 [] 271.2 5.4e-80 PF00560.23.fs 1/6 827 850 .. 1 24 [] 11.4 0.045 PF00560.23.ls 1/6 827 850 .. 1 24 [] 13.3 0.83 PF00560.23.ls 3/6 884 907 .. 1 24 [] 8.9 5.7 PF00560.23.ls 5/6 941 959 .. 1 24 [] 10.2 3.2 PF00619.12.ls 1/1 1353 1436 .. 1 89 [] 93.2 7.3e-25 PF00619.12.fs 1/1 1353 1436 .. 1 89 [] 91.2 1.2e-24 Alignments of top-scoring domains: PF02758.6.ls: domain 1 of 1, from 23 to 106: score 104.8, E = 2.3e-28 *->krilLlkyLEeLndeeLkkFKslLk..tplekgdlkIpwgelekadr ++ +L +yLE L++eeLk+F++lL ++ +++++ +++p ++ ek + KIAA0926 23 AWGRLACYLEFLKKEELKEFQLLLAnkAHSRSSSGETP-AQPEKTSG 68 idlAdlLvekygedaAwdvtlkifekinlrdLaekLqr<-* +++A++Lv++yge++Awd++l+++e+++lr+L++++q+ KIAA0926 69 MEVASYLVAQYGEQRAWDLALHTWEQMGLRSLCAQAQE 106 PF02758.6.fs: domain 1 of 2, from 23 to 106: score 102.8, E = 9.3e-28 *->krilLlkyLEeLndeeLkkFKslLk..tplekgdlkIpwgelekadr ++ +L +yLE L++eeLk+F++lL ++ +++++ +++p ++ ek + KIAA0926 23 AWGRLACYLEFLKKEELKEFQLLLAnkAHSRSSSGETP-AQPEKTSG 68 idlAdlLvekygedaAwdvtlkifekinlrdLaekLqr<-* +++A++Lv++yge++Awd++l+++e+++lr+L++++q+ KIAA0926 69 MEVASYLVAQYGEQRAWDLALHTWEQMGLRSLCAQAQE 106 PF05729.3.ls: domain 1 of 1, from 346 to 515: score 273.1, E = 5.2e-79 *->rtvilqGeAGsGKTtLlqklallWaqgklpqdafdfvFflscrelsr r vilqG+AG+GK+tL++++ +W++g+l++d+f++vF++screl + KIAA0926 346 RIVILQGAAGIGKSTLARQVKEAWGRGQLYGDRFQHVFYFSCRELAQ 392 sgeaaalLrsLadlLfsqwpepaapveeteKlFeeskvfavilelperlL s+ sLa+l+ +++ + +ap+++ il++perlL KIAA0926 393 SKVV-----SLAELIGKDGTATPAPIRQ-------------ILSRPERLL 424 kSalllpgqttvlilDGlDElksqlgqpdgelctdwkepqpvrtLLssLl +ilDG DE +++l++p +elc++w++pqp++ LL+sLl KIAA0926 425 ------------FILDGVDEPGWVLQEPSSELCLHWSQPQPADALLGSLL 462 rkkLLPgaslllTsRPdalrdwllrrgleepqearylevrgFseedrkey k+ LP+as l+T+R++al++ l +le++ r++ev+gFse++rkey KIAA0926 463 GKTILPEASFLITARTTALQN--LIPSLEQA---RWVEVLGFSESSRKEY 507 vrkyfsde<-* +++yf de KIAA0926 508 FYRYFTDE 515 PF05729.3.fs: domain 1 of 1, from 346 to 515: score 271.2, E = 5.4e-80 *->rtvilqGeAGsGKTtLlqklallWaqgklpqdafdfvFflscrelsr r vilqG+AG+GK+tL++++ +W++g+l++d+f++vF++screl + KIAA0926 346 RIVILQGAAGIGKSTLARQVKEAWGRGQLYGDRFQHVFYFSCRELAQ 392 sgeaaalLrsLadlLfsqwpepaapveeteKlFeeskvfavilelperlL s+ sLa+l+ +++ + +ap+++ il++perlL KIAA0926 393 SKVV-----SLAELIGKDGTATPAPIRQ-------------ILSRPERLL 424 kSalllpgqttvlilDGlDElksqlgqpdgelctdwkepqpvrtLLssLl +ilDG DE +++l++p +elc++w++pqp++ LL+sLl KIAA0926 425 ------------FILDGVDEPGWVLQEPSSELCLHWSQPQPADALLGSLL 462 rkkLLPgaslllTsRPdalrdwllrrgleepqearylevrgFseedrkey k+ LP+as l+T+R++al++ l +le++ r++ev+gFse++rkey KIAA0926 463 GKTILPEASFLITARTTALQN--LIPSLEQA---RWVEVLGFSESSRKEY 507 vrkyfsde<-* +++yf de KIAA0926 508 FYRYFTDE 515 PF00560.23.fs: domain 1 of 6, from 827 to 850: score 11.4, E = 0.045 *->nLeeLdLsgCNpsltgs..lpssl.nl<-* nL+eLdLsg N sl+ ++++ s ++ l KIAA0926 827 NLKELDLSG-N-SLS-HsaVKSLCkTL 850 PF00560.23.ls: domain 1 of 6, from 827 to 850: score 13.3, E = 0.83 *->nLeeLdLsgCNpsltgs..lpssl.nl<-* nL+eLdLsg N sl+ ++++ s ++ l KIAA0926 827 NLKELDLSG-N-SLS-HsaVKSLCkTL 850 PF00560.23.ls: domain 3 of 6, from 884 to 907: score 8.9, E = 5.7 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L+eLdLs N lt+ +++ ++ l KIAA0926 884 TLTELDLSF-N-VLTDAGAKHlCqRL 907 PF00560.23.ls: domain 5 of 6, from 941 to 959: score 10.2, E = 3.2 *->nLeeLdLsgCNpsltgslpsslnl<-* +L+eLdL+ N +l +++ + l KIAA0926 941 SLKELDLQQ-N-NL-DDVGV--RL 959 PF00619.12.ls: domain 1 of 1, from 1353 to 1436: score 93.2, E = 7.3e-25 *->rellrknRvaLvrrlgketldglLDyLleknVLteeeyEeIkaantt ++++++ R++L++r++ +++ +LD L++ VL++e+yE+++a ++t KIAA0926 1353 LHFVDQYREQLIARVT--SVEVVLDKLHGQ-VLSQEQYERVLA-ENT 1395 rrdkareLldlvqkkGpeafqiFleaLretgqphLadllels<-* r++++r+L++l q++++++++ +++aL+e ++phL ++l+ + KIAA0926 1396 RPSQMRKLFSLSQSWDRKCKDGLYQALKE-THPHLIMELWEK 1436 PF00619.12.fs: domain 1 of 1, from 1353 to 1436: score 91.2, E = 1.2e-24 *->rellrknRvaLvrrlgketldglLDyLleknVLteeeyEeIkaantt ++++++ R++L++r++ +++ +LD L++ VL++e+yE+++a ++t KIAA0926 1353 LHFVDQYREQLIARVT--SVEVVLDKLHGQ-VLSQEQYERVLA-ENT 1395 rrdkareLldlvqkkGpeafqiFleaLretgqphLadllels<-* r++++r+L++l q++++++++ +++aL+e ++phL ++l+ + KIAA0926 1396 RPSQMRKLFSLSQSWDRKCKDGLYQALKE-THPHLIMELWEK 1436 //