hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17122262/chunk_1/iprscan-20080502-17122262.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0933 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04118.4.fs Dopey, N-terminal 378.5 9.8e-111 1 PF04118.4.ls Dopey, N-terminal 179.4 8.5e-51 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04118.4.fs 1/1 1 163 [. 151 318 .] 378.5 9.8e-111 PF04118.4.ls 1/1 1 163 [. 1 318 [] 179.4 8.5e-51 Alignments of top-scoring domains: PF04118.4.fs: domain 1 of 1, from 1 to 163: score 378.5, E = 9.8e-111 *->LpGLEEGvdeseREvyaLLdrlckvVnDpkvFYtcLWssiLssPsiR LpGLEEG+++s+R ++aLL+rl++vV+ ++vFYt+LW+s+L+sPsiR KIAA0933 1 LPGLEEGSEISDR-TDALLLRLSLVVG-KEVFYTALWGSVLASPSIR 45 LPAlvYllehfNklaeedeQiyviGdnselmVksLcAalsDsGdiLVQRn LPA+v++++h+N++a+++eQ+y++G+n++l+VksL+A+l+Ds ++LVQRn KIAA0933 46 LPASVFVVGHINRDAPGREQKYMLGTNHQLTVKSLRASLLDS-NVLVQRN 94 lLdfLLlyFPlqstllsnedPFlvkLLrrslasILsAAtqtLLRRDmSLN +L+++L++FP++++l+sne+ +++LLr+++++ILsAAtqtLLRRDmSLN KIAA0933 95 NLEIVLFFFPFYTCLDSNER--AIPLLRSDIVRILSAATQTLLRRDMSLN 142 RRLYaWLlGssvetnlvisdS<-* RRLYaWLlGs++++n+v+++S KIAA0933 143 RRLYAWLLGSDIKGNTVVPES 163 PF04118.4.ls: domain 1 of 1, from 1 to 163: score 179.4, E = 8.5e-51 *->lneeqdlsnDaKYRkYakaIdKALrnFEtssEWADLISaLGKLaKvl KIAA0933 - ----------------------------------------------- - QSNskfvvIPrRLlvsKRLAqCLHPALPSGVHLKALETYdvIFeIiGpkk KIAA0933 - -------------------------------------------------- - LaeeLflySvGLFPLlshaaikVkpeLltIyEkYfVPLGkkLRPaLqaFl KIAA0933 - -------------------------------------------------- - iGlLpGLEEGvdeseREvyaLLdrlckvVnDpkvFYtcLWssiLssPsiR LpGLEEG+++s+R ++aLL+rl++vV+ ++vFYt+LW+s+L+sPsiR KIAA0933 1 ---LPGLEEGSEISDR-TDALLLRLSLVVG-KEVFYTALWGSVLASPSIR 45 LPAlvYllehfNklaeedeQiyviGdnselmVksLcAalsDsGdiLVQRn LPA+v++++h+N++a+++eQ+y++G+n++l+VksL+A+l+Ds ++LVQRn KIAA0933 46 LPASVFVVGHINRDAPGREQKYMLGTNHQLTVKSLRASLLDS-NVLVQRN 94 lLdfLLlyFPlqstllsnedPFlvkLLrrslasILsAAtqtLLRRDmSLN +L+++L++FP++++l+sne+ +++LLr+++++ILsAAtqtLLRRDmSLN KIAA0933 95 NLEIVLFFFPFYTCLDSNER--AIPLLRSDIVRILSAATQTLLRRDMSLN 142 RRLYaWLlGssvetnlvisdS<-* RRLYaWLlGs++++n+v+++S KIAA0933 143 RRLYAWLLGSDIKGNTVVPES 163 //