hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17190694/chunk_1/iprscan-20080502-17190694.nocrc
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Query sequence: KIAA0937
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02825.10.ls WWE domain                                     251.4    1.8e-72   2
PF02825.10.fs WWE domain                                     247.6    2.4e-71   2
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           31.9    8.3e-11   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           33.8    5.7e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02825.10.fs   1/2      30   112 ..     1    89 []   119.6  1.1e-33
PF02825.10.ls   1/2      30   112 ..     1    89 []   121.5  2.1e-33
PF02825.10.fs   2/2     113   189 ..     1    89 []   128.0  4.5e-36
PF02825.10.ls   2/2     113   189 ..     1    89 []   129.8    7e-36
PF00097.15.fs   1/1     443   501 ..     1    50 []    31.9  8.3e-11
PF00097.15.ls   1/1     443   501 ..     1    50 []    33.8  5.7e-07

Alignments of top-scoring domains:
PF02825.10.fs: domain 1 of 2, from 30 to 112: score 119.6, E = 1.1e-33
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      s + ++  a+ +vvvWe+    +++g+WrpYsp+vs++IE++ +a+ 
    KIAA0937    30    SPGLAMLLAS-AVVVWEWL---NEHGRWRPYSPAVSHHIEAVVRAGP 72   

                   k..GsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   + +GsV+l+qv ++ + pY+id+++m+Q+r++tg   t R+VrR   
    KIAA0937    73 RagGSVVLGQV-DSRLAPYIIDLQSMNQFRQDTG---TLRPVRR    112  

PF02825.10.ls: domain 1 of 2, from 30 to 112: score 121.5, E = 2.1e-33
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      s + ++  a+ +vvvWe+    +++g+WrpYsp+vs++IE++ +a+ 
    KIAA0937    30    SPGLAMLLAS-AVVVWEWL---NEHGRWRPYSPAVSHHIEAVVRAGP 72   

                   k..GsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   + +GsV+l+qv ++ + pY+id+++m+Q+r++tg   t R+VrR   
    KIAA0937    73 RagGSVVLGQV-DSRLAPYIIDLQSMNQFRQDTG---TLRPVRR    112  

PF02825.10.fs: domain 2 of 2, from 113 to 189: score 128.0, E = 4.5e-36
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      ++++ps+++g k+vvWe+e   +dng+W+pY+++v ++I++ay++++
    KIAA0937   113    NYYDPSSAPG-KGVVWEWE---NDNGSWTPYDMEVGITIQHAYEKQH 155  

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   +   +++ + +++G+ Y+idfntm Q++++t+   ++R+VrR   
    KIAA0937   156 P---WID-L-TSIGFSYVIDFNTMGQINRQTQ---RQRRVRR    189  

PF02825.10.ls: domain 2 of 2, from 113 to 189: score 129.8, E = 7e-36
                   *->svappsnvagikvvvWeyerSvddnggWrpYsphvsrlIEnayaakk
                      ++++ps+++g k+vvWe+e   +dng+W+pY+++v ++I++ay++++
    KIAA0937   113    NYYDPSSAPG-KGVVWEWE---NDNGSWTPYDMEVGITIQHAYEKQH 155  

                   kGsVtleqvCsicGrpYtidfntmtQlreetgslsttReVrR<-*
                   +   +++ + +++G+ Y+idfntm Q++++t+   ++R+VrR   
    KIAA0937   156 P---WID-L-TSIGFSYVIDFNTMGQINRQTQ---RQRRVRR    189  

PF00097.15.fs: domain 1 of 1, from 443 to 501: score 31.9, E = 8.3e-11
                   *->CrICleelkepsnd...........fplilpCgHsGslkyfCrsCle
                      C IC+e l+ ps +++++++ +++ +  ++ CgH      ++  Cl+
    KIAA0937   443    CTICMERLTAPSGYkgpqptvkpdlVGKLSRCGHV-----YHIYCLV 484  

                   rwlss...sgnttCplC<-*
                    ++++++++g+ +Cp C   
    KIAA0937   485 AMYNNgnkDGSLQCPTC    501  

PF00097.15.ls: domain 1 of 1, from 443 to 501: score 33.8, E = 5.7e-07
                   *->CrICleelkepsnd...........fplilpCgHsGslkyfCrsCle
                      C IC+e l+ ps +++++++ +++ +  ++ CgH      ++  Cl+
    KIAA0937   443    CTICMERLTAPSGYkgpqptvkpdlVGKLSRCGHV-----YHIYCLV 484  

                   rwlss...sgnttCplC<-*
                    ++++++++g+ +Cp C   
    KIAA0937   485 AMYNNgnkDGSLQCPTC    501  

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