# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh04894.fasta.huge -Q ../query/KIAA0940.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0940, 699 aa vs ./tmplib.23663 library 1986806 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 12.8888+/-0.0125; mu= -19.0140+/- 0.845 mean_var=698.0694+/-166.671, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.048543 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1673 ( 712 res) fg00690 ( 712) 1981 153.9 4.8e-38 >>KIAA1673 ( 712 res) fg00690 (712 aa) initn: 2367 init1: 1847 opt: 1981 Z-score: 774.9 bits: 153.9 E(): 4.8e-38 Smith-Waterman score: 2604; 59.916% identity (74.402% similar) in 711 aa overlap (8-699:60-712) 10 20 30 KIAA09 ILSILKNWTLKAAQT--MQDDLL-MDKSKTQPQPQQQ : . : : .::..: .:.:.: : ::. KIAA16 PPHHHQNATPSPAAFINNNTAANGSSAGSAWLFPAPATHNIQDEILGSEKAKSQQQEQQD 30 40 50 60 70 80 40 50 60 70 80 90 KIAA09 QRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLP ..:: .: : .:: : .: : :::.. . :: .:...:::.: KIAA16 PLEKQQLSP-SPGQEAGILP-ETEKAKSEENQG------DNSSENGNGKEKIRIESPVLT 90 100 110 120 130 140 100 110 120 130 140 KIAA09 GLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWS-----TGTTNAVED-SFF-QGITPV-- :..... : : . .:: .: :.:: ...: :: ::: :: .:. KIAA16 GFDYQEATGLGTSTQ-PLTSSASSLTGF-SNWSAAIAPSSSTIINEDASFFHQGGVPAAS 150 160 170 180 190 150 160 170 180 190 200 KIAA09 --NGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQ ::..:::::::::.: :::.:::::: .::: . : : ..: : KIAA16 ANNGALLFQNFPHHVSPGFGGSFSPQIG-PLSQHHPHHPH----------FQHHHSQHQQ 200 210 220 230 240 210 220 230 240 250 260 KIAA09 QRRSPASPSQAPYAQRSAA-AAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQS :::::::: :...:.:: : .:: : .. . . . ::::. KIAA16 QRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSP----WSSYQSPSPTPSSSWSPG-- 250 260 270 280 290 300 270 280 290 300 310 320 KIAA09 VNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFP .. . ::: : ::: ::... :. .::: :::::: :.:: : :. KIAA16 -----GGGYGGWGGSQ-GRDHRRGLNGGI-------TPLNSISPLKKNFASNHIQLQKYA 310 320 330 340 330 340 350 360 370 380 KIAA09 R-AAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTDHEPLKG : .. .. ::::::. :.:: ..:: :: : ::..::::.::.:..:.... .:. KIAA16 RPSSAFAPKSWMEDSLNRADN---IFPFPDRPR---TFDMHSLESSLIDIMRAENDTIKA 350 360 370 380 390 400 390 400 410 420 430 KIAA09 RMGINFHHPGTDNIMALNSRSSLFPFEDAFLDDSHGDQALSSGLSSPTRC---QNGERVE : . ..:::::.::.::::..::: : :::.:: .: ::::::: KIAA16 R-----------TYGRRRGQSSLFPMEDGFLDDGRGDQPLHSGLGSP-HCFSHQNGERVE 410 420 430 440 450 440 450 460 470 480 490 KIAA09 RYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSV ::::::::::::::::::::::::::::::.::::::::::::::::::::::::.:::: KIAA16 RYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSV 460 470 480 490 500 510 500 510 520 530 540 550 KIAA09 QALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVP :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 QALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVP 520 530 540 550 560 570 560 570 580 590 600 610 KIAA09 RPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 RPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQH 580 590 600 610 620 630 620 630 640 650 660 670 KIAA09 NDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGRE ..:::::::::::::::.::::::.::::::::::::::::::::::::::.:::::::: KIAA16 GEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGRE 640 650 660 670 680 690 680 690 KIAA09 FHKPLVKEGGDRPRHVPFRWS :::::::::::::::. :::. KIAA16 FHKPLVKEGGDRPRHISFRWN 700 710 699 residues in 1 query sequences 1986806 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:22:19 2008 done: Thu Dec 18 15:22:19 2008 Total Scan time: 0.540 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]