hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17254465/chunk_1/iprscan-20080502-17254465.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0941 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00239 53.3 3.1e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/1 35 138 .. 1 92 [] 53.3 3.1e-11 Alignments of top-scoring domains: SM00239: domain 1 of 1, from 35 to 138: score 53.3, E = 3.1e-11 *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN + v++++A++L+++++++++D Y +++ ++ + T+v +ktl KIAA0941 35 HVQVTVLQAKDLKpkgksgtnDTYTIIQlgkekySTSVAEKTL---E 78 PvWnEesetFeFevpp.........s.LeieVyDk......dfiGrvtip PvW E + Fe+p ++++++ L + V++++ + ++f+G+v i+ KIAA0941 79 PVWKE---EASFELPGlliqgspekYiLFLIVMHRslvgldKFLGQVAIN 125 pnnahqhsadglihlsell.ggrh.kl<-* l+++ + ++k KIAA0941 126 --------------LNDIFeDKQRrKT 138 //