hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17341422/chunk_1/iprscan-20080502-17341422.nocrc
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Query sequence: KIAA0945
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00439                                                  47.4    1.8e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00439    1/1     641   796 ..     1   163 []    47.4  1.8e-09

Alignments of top-scoring domains:
SM00439: domain 1 of 1, from 641 to 796: score 47.4, E = 1.8e-09
                   *->etisvGDfVlvepddfknreeKagrnvgdepyyvarIeeifetkkgk
                      eti+v D+Vl+++     r+         +++yva+I  ++e+++ +
    KIAA0945   641    ETIRVRDTVLLKSGP---RK--------TSTPYVAKISALWENPESG 676  

                   kskkvrvrwfyRPedtvlgkarllereprlkdyafdknEvflsecPcedd
                      +  + w+yRPe  ++g+ +++  +         +nEvf+s +  +d 
    KIAA0945   677 -ELMMSLLWYYRPEHLQGGRSPSMHEPL--------QNEVFASRH--QDQ 715  

                   vpledIigkCnVlklsdyeklrpeesnsda.klerakaEERKk.......
                   + + +I++kC Vl +++y++ + + ++  +++ +      RK+   +++ 
    KIAA0945   716 NSVACIEEKCYVLTFAEYCRFCAMAKRRGEgLPS------RKTalvppsa 759  

                   .............kgeedvFfcellYdptkgsFkklp<-*
                   + +++++++ ++++++e vF+c+ +Yd  +g+  k p   
    KIAA0945   760 dystpphrtvpedTDPELVFLCRHVYDFRHGRILKNP    796  

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