HUGE

Gene/Protein Characteristic Table for KIAA0950

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK02007
Accession No. :	AB023167
Description :	Fas apoptotic inhibitory molecule 2.
HUGO Gene Name :	Fas apoptotic inhibitory molecule 2 (FAIM2)
Clone Name :	hj05289 [Vector Info]
Flexi ORF Clone :	pF1KA0950
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4640 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3607 bp

Genome contig ID gi89161190r_48446947
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
ACTGGAGATAAAAATAAAAGCAATTGTGACACCTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGTTGTTTCCCTCGTCTGCCGTGTGCTGGTTGCCTCAGATGGTCGTGGAG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 r 48546947 48583924 12 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 343 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
Q9BWQ8	1.2e-109	100.0	Fas apoptotic i...	Homo sapiens
Q5R4I4	3.8e-109	99.7	Fas apoptotic i...	Pongo abelii
XP_001504277	8.3e-107	96.2	similar to Fas ...	Equus caballus
XP_001110495	5.7e-106	97.2	similar to Fas ...	Macaca mulatta
Q1LZ71	2.1e-105	94.9	Fas apoptotic i...	Bos taurus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR006214 122 342 PF01027 Protein of unknown function UPF0005

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR006214	122	342	PF01027	Protein of unknown function UPF0005

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 133 VYTILLIQLLVTLAVVALFTFCD 155 PRIMARY 23

2 169 WASYAVFFATYLTLACCSG 187 SECONDARY 19

3 192 FPWNLILLTVFTLSMAYLTGMLS 214 SECONDARY 23

4 221 SVLLCLGITALVCLSVTVFS 240 PRIMARY 20

5 252 GVLFVLLMTLFFSGLILAILLPF 274 PRIMARY 23

6 282 AVYAALGAGVFTLFLALDTQLLM 304 PRIMARY 23

7 316 YIFGALNIYLDIIYIFTFFLQLF 338 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	133	VYTILLIQLLVTLAVVALFTFCD	155	PRIMARY	23
2	169	WASYAVFFATYLTLACCSG	187	SECONDARY	19
3	192	FPWNLILLTVFTLSMAYLTGMLS	214	SECONDARY	23
4	221	SVLLCLGITALVCLSVTVFS	240	PRIMARY	20
5	252	GVLFVLLMTLFFSGLILAILLPF	274	PRIMARY	23
6	282	AVYAALGAGVFTLFLALDTQLLM	304	PRIMARY	23
7	316	YIFGALNIYLDIIYIFTFFLQLF	338	SECONDARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AATCTGACTGTCCGGAATGTG

Primer_r
: AAGAGTAGGGAATGGAAGAAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AATCTGACTGTCCGGAATGTG
Primer_r	: AAGAGTAGGGAATGGAAGAAC
PCR product length	: 178 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3607 bp
Genome contig ID	gi89161190r_48446947
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- ACTGGAGATAAAAATAAAAGCAATTGTGACACCTG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AGTTGTTTCCCTCGTCTGCCGTGTGCTGGTTGCCTCAGATGGTCGTGGAG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	r	48546947	48583924	12	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0950

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information