hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17491707/chunk_1/iprscan-20080502-17491707.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0954 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05224.3.fs NDT80 / PhoG like DNA-binding family 210.0 1.9e-61 1 PF05224.3.ls NDT80 / PhoG like DNA-binding family 211.6 1.6e-60 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05224.3.fs 1/1 425 572 .. 1 261 [] 210.0 1.9e-61 PF05224.3.ls 1/1 425 572 .. 1 261 [] 211.6 1.6e-60 Alignments of top-scoring domains: PF05224.3.fs: domain 1 of 1, from 425 to 572: score 210.0, E = 1.9e-61 *->ewicYrRNyFQlvasfelpgfspptfvkhvftilnenektggspias +++c+++N+FQ+++++ + g p++vk KIAA0954 425 AFVCQKKNHFQVTVYIGMLGE--PKYVK------------------- 450 lgsgervpIkyFalkivAtkcseDirnspInLvQiPWKsatsahtakRdK ++++++p ++F+lk++++k ++ n+ In++Q ++++++ KIAA0954 451 -TPEGLKPLDCFYLKLHGVKLEAL--NQSINIEQ----------SQSDRS 487 gpqfaPevvplvpgpLPphqiireaSnvrnnskmkkfdstFyLhrpygqq +++f+P++v+l+p KIAA0954 488 KRPFNPVTVNLPP------------------------------------- 500 nqnlqsykddsiLetYPddriktvarveRLQFssaTanNgrrkgrPNPlQ +++t+++v+RL+Fs++TanN+r+kg+PNP+Q KIAA0954 501 -------------------EQVTKVTVGRLHFSETTANNMRKKGKPNPDQ 531 rhFvLvVkLlAiVddnhvhdeidedyseldelntlsggtkivlaslkSpp r+F+LvV L+A +++++++++ + S++ KIAA0954 532 RYFMLVVALQA---------------------HAQNQNYTLAAQ--ISER 558 lIVRGRSPsnYqsr<-* +IVR+++P++++s+ KIAA0954 559 IIVRASNPGQFESD 572 PF05224.3.ls: domain 1 of 1, from 425 to 572: score 211.6, E = 1.6e-60 *->ewicYrRNyFQlvasfelpgfspptfvkhvftilnenektggspias +++c+++N+FQ+++++ + g p++vk KIAA0954 425 AFVCQKKNHFQVTVYIGMLGE--PKYVK------------------- 450 lgsgervpIkyFalkivAtkcseDirnspInLvQiPWKsatsahtakRdK ++++++p ++F+lk++++k ++ n+ In++Q ++++++ KIAA0954 451 -TPEGLKPLDCFYLKLHGVKLEAL--NQSINIEQ----------SQSDRS 487 gpqfaPevvplvpgpLPphqiireaSnvrnnskmkkfdstFyLhrpygqq +++f+P++v+l+p KIAA0954 488 KRPFNPVTVNLPP------------------------------------- 500 nqnlqsykddsiLetYPddriktvarveRLQFssaTanNgrrkgrPNPlQ +++t+++v+RL+Fs++TanN+r+kg+PNP+Q KIAA0954 501 -------------------EQVTKVTVGRLHFSETTANNMRKKGKPNPDQ 531 rhFvLvVkLlAiVddnhvhdeidedyseldelntlsggtkivlaslkSpp r+F+LvV L+A +++++++++ + S++ KIAA0954 532 RYFMLVVALQA---------------------HAQNQNYTLAAQ--ISER 558 lIVRGRSPsnYqsr<-* +IVR+++P++++s+ KIAA0954 559 IIVRASNPGQFESD 572 //