hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17541054/chunk_1/iprscan-20080502-17541054.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0957 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 215.3 1.3e-61 7 PF00023.20.fs Ankyrin repeat 202.0 1.3e-57 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.fs 1/8 15 37 .. 6 28 .. 0.6 35 PF00023.20.fs 2/8 42 74 .. 1 33 [] 47.6 2.8e-12 PF00023.20.ls 1/7 42 74 .. 1 33 [] 49.6 1e-11 PF00023.20.ls 2/7 75 107 .. 1 33 [] 23.2 0.00088 PF00023.20.fs 3/8 75 107 .. 1 33 [] 21.2 6.4e-05 PF00023.20.ls 3/7 108 140 .. 1 33 [] 38.5 2.1e-08 PF00023.20.fs 4/8 108 140 .. 1 33 [] 36.5 3.3e-09 PF00023.20.ls 4/7 141 173 .. 1 33 [] 26.9 6.7e-05 PF00023.20.fs 5/8 141 173 .. 1 33 [] 24.9 5.9e-06 PF00023.20.ls 5/7 174 206 .. 1 33 [] 32.0 2e-06 PF00023.20.fs 6/8 174 206 .. 1 33 [] 30.0 2.3e-07 PF00023.20.ls 6/7 207 239 .. 1 33 [] 38.9 1.6e-08 PF00023.20.fs 7/8 207 239 .. 1 33 [] 36.9 2.6e-09 PF00023.20.ls 7/7 240 273 .. 1 33 [] 6.3 3.5 PF00023.20.fs 8/8 240 273 .. 1 33 [] 4.3 3.2 Alignments of top-scoring domains: PF00023.20.fs: domain 1 of 8, from 15 to 37: score 0.6, E = 35 *->LHlAalrgnlevvklLlsqGAdl<-* L +Aa++g++e v L+++GA + KIAA0957 15 LLVAAYKGQTENVVQLINKGARV 37 PF00023.20.fs: domain 2 of 8, from 42 to 74: score 47.6, E = 2.8e-12 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLHlAa +g+l vv+ Ll++G+dl++qdd KIAA0957 42 HGRTPLHLAANKGHLPVVQILLKAGCDLDVQDD 74 PF00023.20.ls: domain 1 of 7, from 42 to 74: score 49.6, E = 1e-11 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+TPLHlAa +g+l vv+ Ll++G+dl++qdd KIAA0957 42 HGRTPLHLAANKGHLPVVQILLKAGCDLDVQDD 74 PF00023.20.ls: domain 2 of 7, from 75 to 107: score 23.2, E = 0.00088 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +T+LH A gn+e++ L+ G+ l+ qd+ KIAA0957 75 GDQTALHRATVVGNTEIIAALIHEGCALDRQDK 107 PF00023.20.fs: domain 3 of 8, from 75 to 107: score 21.2, E = 6.4e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +T+LH A gn+e++ L+ G+ l+ qd+ KIAA0957 75 GDQTALHRATVVGNTEIIAALIHEGCALDRQDK 107 PF00023.20.ls: domain 3 of 7, from 108 to 140: score 38.5, E = 2.1e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+T+LH A+ +g + +klL+++GA++ a+++ KIAA0957 108 DGNTALHEASWHGFSQSAKLLVKAGANVLAKNK 140 PF00023.20.fs: domain 4 of 8, from 108 to 140: score 36.5, E = 3.3e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+T+LH A+ +g + +klL+++GA++ a+++ KIAA0957 108 DGNTALHEASWHGFSQSAKLLVKAGANVLAKNK 140 PF00023.20.ls: domain 4 of 7, from 141 to 173: score 26.9, E = 6.7e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LHlA+++ + + + Ll +G +++++ KIAA0957 141 AGNTALHLACQNSHSQSTRVLLLAGSRADLKNN 173 PF00023.20.fs: domain 5 of 8, from 141 to 173: score 24.9, E = 5.9e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LHlA+++ + + + Ll +G +++++ KIAA0957 141 AGNTALHLACQNSHSQSTRVLLLAGSRADLKNN 173 PF00023.20.ls: domain 5 of 7, from 174 to 206: score 32.0, E = 2e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH+Aa++++l++++lLl + ++++ ++ KIAA0957 174 AGDTCLHVAARYNHLSIIRLLLTAFCSVHEKNQ 206 PF00023.20.fs: domain 6 of 8, from 174 to 206: score 30.0, E = 2.3e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH+Aa++++l++++lLl + ++++ ++ KIAA0957 174 AGDTCLHVAARYNHLSIIRLLLTAFCSVHEKNQ 206 PF00023.20.ls: domain 6 of 7, from 207 to 239: score 38.9, E = 1.6e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH+Aa ++++v+k Ll++GAd ++++ KIAA0957 207 AGDTALHVAAALNHKKVAKILLEAGADTTIVNN 239 PF00023.20.fs: domain 7 of 8, from 207 to 239: score 36.9, E = 2.6e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+LH+Aa ++++v+k Ll++GAd ++++ KIAA0957 207 AGDTALHVAAALNHKKVAKILLEAGADTTIVNN 239 PF00023.20.ls: domain 7 of 7, from 240 to 273: score 6.3, E = 3.5 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* G+TPL A +++n+ev+ lL + ++ a d KIAA0957 240 AGQTPLETARYHNNPEVALLLTKaPQGSVSAGDT 273 PF00023.20.fs: domain 8 of 8, from 240 to 273: score 4.3, E = 3.2 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* G+TPL A +++n+ev+ lL + ++ a d KIAA0957 240 AGQTPLETARYHNNPEVALLLTKaPQGSVSAGDT 273 //