HUGE

Gene/Protein Characteristic Table for KIAA0962

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00699
Accession No. :	AB023179
Description :	DnaJ homolog subfamily C member 16 precursor.
HUGO Gene Name :	DnaJ (Hsp40) homolog, subfamily C, member 16 (DNAJC16)
Clone Name :	hj05850s1 [Vector Info]
Flexi ORF Clone :	pF1KSDA0962
Source :	Human adult brain
Note :	We replaced hj05850, former representative clones for KIAA0962 with hj05850s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 6035 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 3566 bp

Genome contig ID gi89161185f_15625939
PolyA signal sequence
(GATAAA,-15)
+----*----+----*----+----*----+----
AATAAACTATTTTAATGTCTGATAAAAAAAAAAAC
Flanking genome sequence None

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 f 15725939 15770815 15 100.0 Terminal No-hit

Features of the protein sequence	Description

Length: 822 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_513050	99.5	DnaJ (Hsp40) ho...	Pan troglodytes
Q9Y2G8	100.0	DnaJ homolog su...	Homo sapiens
BAF85168	99.9	unnamed protein...	Homo sapiens
Q5RCM7	98.2	DnaJ homolog su...	Pongo abelii
XP_001489818	94.2	similar to DnaJ...	Equus caballus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB058733	0.00013	23.7	KIAA1830

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR003095 80 99 PR00625 Heat shock protein DnaJ

IPR003095 110 130 PR00625 Heat shock protein DnaJ

HMMPfam IPR001623 69 130 PF00226 Heat shock protein DnaJ

HMMSmart IPR001623 68 125 SM00271 Heat shock protein DnaJ

ProfileScan IPR001623 69 133 PS50076 Heat shock protein DnaJ

ScanRegExp IPR001623 110 129 PS00636 Heat shock protein DnaJ

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR003095	80	99	PR00625	Heat shock protein DnaJ
IPR003095	110	130	PR00625	Heat shock protein DnaJ
HMMPfam	IPR001623	69	130	PF00226	Heat shock protein DnaJ
HMMSmart	IPR001623	68	125	SM00271	Heat shock protein DnaJ
ProfileScan	IPR001623	69	133	PS50076	Heat shock protein DnaJ
ScanRegExp	IPR001623	110	129	PS00636	Heat shock protein DnaJ

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 46 LSISWQFLIVLVLILQILSALDF 68 PRIMARY 23

2 577 MPLLSLIFSALFILFGTVIVQAF 599 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	46	LSISWQFLIVLVLILQILSALDF	68	PRIMARY	23
2	577	MPLLSLIFSALFILFGTVIVQAF	599	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CAGCCAGTTAGAGAGCATACC

Primer_r
: CCTTGCTTTGACATTTGAACG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: UniGene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	3566 bp
Genome contig ID	gi89161185f_15625939
PolyA signal sequence (GATAAA,-15)	+--------+--------+----*----+---- AATAAACTATTTTAATGTCTGATAAAAAAAAAAAC
Flanking genome sequence	None

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	f	15725939	15770815	15	100.0	Terminal No-hit

Primer_f	: CAGCCAGTTAGAGAGCATACC
Primer_r	: CCTTGCTTTGACATTTGAACG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA0962

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information