# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj05850s1.fasta.huge -Q ../query/KIAA0962.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0962, 822 aa vs ./tmplib.23663 library 1986683 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.0887+/-0.0048; mu= 20.3240+/- 0.326 mean_var=82.7028+/-19.407, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.141031 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1830 ( 486 res) hj01608 ( 486) 159 42.5 0.00013 >>KIAA1830 ( 486 res) hj01608 (486 aa) initn: 116 init1: 89 opt: 159 Z-score: 174.7 bits: 42.5 E(): 0.00013 Smith-Waterman score: 159; 23.684% identity (57.895% similar) in 190 aa overlap (192-371:61-237) 170 180 190 200 210 KIAA09 DESFFHFPFNSERRDSIDEKYLLHFSHYVNEVVPDSFKKP-----YLIKITSDWCFSCIH : . .:::. .:. . . :: : . KIAA18 ASMAAWKSWTALRLCATVVVLDMVVCKGFVEDLDESFKENRNDDIWLVDFYAPWCGHCKK 40 50 60 70 80 90 220 230 240 250 260 270 KIAA09 IEPVWKEVIQELEELG--VGIGVVHAGYERRLAHHLGAHSTPSILGIINGKISF-FHNAV .::.:.:: :.. .: : .: . : .: ..:... :.: ...: ... ... KIAA18 LEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTI-KLLKGDLAYNYRGPR 100 110 120 130 140 280 290 300 310 320 330 KIAA09 VRENLRQFVESLLPGNLVEKVTNKNYVRFLSGWQQENKPHVLLFDQTPI-VPLLYKLTAF ..... .:.. . : :.. . .... ... .: : ..: . :: : KIAA18 TKDDIIEFAHRV-SGALIRPLPSQQM------FEHMQKRHRVFFVYVGGESPLKEK---- 150 160 170 180 190 340 350 360 370 380 390 KIAA09 AYKDYLSFGYVYVGL-RGTEEMTRRYNINIYAPTLLVFKEHINRPADVIQARGMKKQIID : : : ::. . ..::.. .: :..::::. KIAA18 -YIDAASELIVYTYFFSASEEVVPEYVTLKEMPAVLVFKDETYFVYDEYEDGDLSSWINR 200 210 220 230 240 250 400 410 420 430 440 450 KIAA09 DFITRNKYLLAARLTSQKLFHELCPVKRSHRQRKYCVVLLTAETTKLSKPFEAFLSFALA KIAA18 ERFQNYLAMDGFLLYELGDTGKLVALAVIDEKNTSVEHTRLKSIIQEVARDYRDLFHRDF 260 270 280 290 300 310 822 residues in 1 query sequences 1986683 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:23:18 2008 done: Thu Dec 18 15:23:18 2008 Total Scan time: 0.610 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]