hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18043039/chunk_1/iprscan-20080502-18043039.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0962 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00226.21.fs DnaJ domain 134.1 3.1e-39 1 PF00226.21.ls DnaJ domain 135.9 1e-37 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00226.21.fs 1/1 69 130 .. 1 76 [] 134.1 3.1e-39 PF00226.21.ls 1/1 69 130 .. 1 76 [] 135.9 1e-37 Alignments of top-scoring domains: PF00226.21.fs: domain 1 of 1, from 69 to 130: score 134.1, E = 3.1e-39 *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktnerae d+Y +LGv+r+As+++IKKAY+kLA+++HPDKN++++ KIAA0962 69 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG---------- 105 skeeAeekFkeineAYevLSDpekRaiYD<-* Ae+kF +i++AYe+LS++ekR++YD KIAA0962 106 ----AEDKFIQISKAYEILSNEEKRSNYD 130 PF00226.21.ls: domain 1 of 1, from 69 to 130: score 135.9, E = 1e-37 *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktnerae d+Y +LGv+r+As+++IKKAY+kLA+++HPDKN++++ KIAA0962 69 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG---------- 105 skeeAeekFkeineAYevLSDpekRaiYD<-* Ae+kF +i++AYe+LS++ekR++YD KIAA0962 106 ----AEDKFIQISKAYEILSNEEKRSNYD 130 //