hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18263366/chunk_1/iprscan-20080502-18263366.nocrc
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Query sequence: KIAA0975
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00787.14.fs PX domain                                       99.9    5.8e-30   1
PF00787.14.ls PX domain                                      101.7    2.1e-27   1
PF00560.23.ls Leucine Rich Repeat                             60.8    4.1e-15   6
PF00560.23.fs Leucine Rich Repeat                             49.8    1.4e-12   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00787.14.fs   1/1      38   142 ..     1   131 []    99.9  5.8e-30
PF00787.14.ls   1/1      38   142 ..     1   131 []   101.7  2.1e-27
PF00560.23.ls   1/6     312   333 ..     1    24 []    12.3      1.3
PF00560.23.ls   2/6     335   355 ..     1    24 []    10.9      2.4
PF00560.23.ls   3/6     357   377 ..     1    24 []    11.7      1.7
PF00560.23.ls   4/6     380   400 ..     1    24 []    12.1      1.4
PF00560.23.ls   5/6     402   422 ..     1    24 []     8.1      8.2

Alignments of top-scoring domains:
PF00787.14.fs: domain 1 of 1, from 38 to 142: score 99.9, E = 5.8e-30
                   *->dpilivvvvdpetsrkkegdkkhtyyvyevttktn.kewsVkRRYsd
                      +p ++++vv+         + ++ty+vy ++++++++ew+Vk+RYsd
    KIAA0975    38    EPAKEARVVG--------SELVDTYTVYIIQVTDGsHEWTVKHRYSD 76   

                   FeeLhekLlrkfp.grilPplPpKklfgryrkeslpmtsvwhssnnfdee
                   F++LhekL  + + +++l  lPpKk++g                  ++++
    KIAA0975    77 FHDLHEKLVAERKiDKNL--LPPKKIIGK-----------------NSRS 107  

                   fiekRrkgLeeyLqrllqhPelsnesevvleFLesd<-*
                    +ekR k+Le+yLq+ll   + ++  +v+++FL+++   
    KIAA0975   108 LVEKREKDLEVYLQKLLAAFPGVT-PRVLAHFLHFH    142  

PF00787.14.ls: domain 1 of 1, from 38 to 142: score 101.7, E = 2.1e-27
                   *->dpilivvvvdpetsrkkegdkkhtyyvyevttktn.kewsVkRRYsd
                      +p ++++vv+         + ++ty+vy ++++++++ew+Vk+RYsd
    KIAA0975    38    EPAKEARVVG--------SELVDTYTVYIIQVTDGsHEWTVKHRYSD 76   

                   FeeLhekLlrkfp.grilPplPpKklfgryrkeslpmtsvwhssnnfdee
                   F++LhekL  + + +++l  lPpKk++g                  ++++
    KIAA0975    77 FHDLHEKLVAERKiDKNL--LPPKKIIGK-----------------NSRS 107  

                   fiekRrkgLeeyLqrllqhPelsnesevvleFLesd<-*
                    +ekR k+Le+yLq+ll   + ++  +v+++FL+++   
    KIAA0975   108 LVEKREKDLEVYLQKLLAAFPGVT-PRVLAHFLHFH    142  

PF00560.23.ls: domain 1 of 6, from 312 to 333: score 12.3, E = 1.3
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                       L++LdLs+ N s++ ++++s++     
    KIAA0975   312    ALTTLDLSH-N-SIS-EIDESVkLI    333  

PF00560.23.ls: domain 2 of 6, from 335 to 355: score 10.9, E = 2.4
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      ++e LdLs+ N +l   +++ l++l   
    KIAA0975   335    KIEFLDLSH-N-GLL-VVDN-LqHL    355  

PF00560.23.ls: domain 3 of 6, from 357 to 377: score 11.7, E = 1.7
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nL +LdLs+ N +l+ sl+  l+     
    KIAA0975   357    NLVHLDLSY-N-KLS-SLEG-LhTK    377  

PF00560.23.ls: domain 4 of 6, from 380 to 400: score 12.1, E = 1.4
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      n+++L+L g N  l+ sl+  l++l   
    KIAA0975   380    NIKTLNLAG-N-LLE-SLSG-LhKL    400  

PF00560.23.ls: domain 5 of 6, from 402 to 422: score 8.1, E = 8.2
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L +LdL++ N +++  +++ +++    
    KIAA0975   402    SLVNLDLRD-N-RIE-QMEE-VrSI    422  

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