# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj06950.fasta.huge -Q ../query/KIAA0976.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0976, 386 aa
 vs ./tmplib.23663 library

1987119 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.7573+/-0.00486; mu= 19.8851+/- 0.332
 mean_var=85.9602+/-20.023, 0's: 0 Z-trim: 4  B-trim: 9 in 1/39
 Lambda= 0.138333

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1857  ( 549 res)   fk03350                     ( 549) 1491 307.4 1.3e-84
KIAA1907  ( 1737 res)   ah00504                    (1737)  271 64.7 4.5e-11


>>KIAA1857  ( 549 res)   fk03350                          (549 aa)
 initn: 1486 init1: 871 opt: 1491  Z-score: 1611.1  bits: 307.4 E(): 1.3e-84
Smith-Waterman score: 1491;  57.478% identity (83.578% similar) in 341 aa overlap (46-385:32-371)

          20        30        40        50        60        70     
KIAA09 KITKNLEMYLSRFLSIHALWVTVSSVMQPYPLVWGHYDLCKTQIYTEEGKVWDYMACQPE
                                     ::. : ::.::. . :.:: .:...::::.
KIAA18 RRCLSRASLGRASADCAAMLHLLALFLHCLPLASGDYDICKSWVTTDEGPTWEFYACQPK
              10        20        30        40        50        60 

          80        90       100       110       120       130     
KIAA09 STDMTKYLKVKLDPPDITCGDPPETFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRH
          .  :.:::..:  :::::::: ::.  :::.:.::::::.:.:::::.:::: : . 
KIAA18 VMRLKDYVKVKVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDKEEEG
              70        80        90       100       110       120 

         140       150       160       170       180       190     
KIAA09 PSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQMILEKSLDYGRTWQ
        .:.::: ::..::.::..::::::.::.::::..:.::: :::  :.:::::: :::::
KIAA18 LATYWQSITWSRYPSPLEANITLSWNKTVELTDDVVMTFEYGRPTVMVLEKSLDNGRTWQ
             130       140       150       160       170       180 

         200       210       220       230        240       250    
KIAA09 PYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYST-GYTTNSKIIHFEIKDRFAFF
       :::.:: ::..:: :. . ..:.:. .. ...::::::  . . . : ..::..::::.:
KIAA18 PYQFYAEDCMEAFGMSARRARDMSSSSAHRVLCTEEYSRWAGSKKEKHVRFEVRDRFAIF
             190       200       210       220       230       240 

          260       270       280       290       300       310    
KIAA09 AGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIK
       ::: :::: .:: .:...: :..:::.::::.::::::.:  .:.. .: .::::::.:.
KIAA18 AGPDLRNMDNLYTRLESAKGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIE
             250       260       270       280       290       300 

          320       330       340       350       360       370    
KIAA09 VRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGTAN
       : :::::::::..: . ...: ::::::::::::::::::.. : :  :::::.:.:. :
KIAA18 VIGRCKCNLHANLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPN
             310       320       330       340       350       360 

          380                                                      
KIAA09 TCIPSISSIGSK                                                
       .:  . .:.:.                                                 
KIAA18 ACAAA-GSFGNCECYGHSNRCSYIDFLNVVTCVSCKHNTRGQHCQHCRLGYYRNGSAELD
              370       380       390       400       410       420

>>KIAA1907  ( 1737 res)   ah00504                         (1737 aa)
 initn: 221 init1: 118 opt: 271  Z-score: 290.6  bits: 64.7 E(): 4.5e-11
Smith-Waterman score: 271;  29.714% identity (55.429% similar) in 175 aa overlap (212-376:4-159)

             190       200       210       220       230       240 
KIAA09 MILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSK
                                     :.... ...  .   ::: :::       .
KIAA19                            RFGPQTLERITRDDA--AICTTEYS-------R
                                          10          20           

             250       260       270       280       290           
KIAA09 IIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPA------VGE
       :. .:  .  . ... :   :   :. :     ::.:  .:..:.:.::        .:.
KIAA19 IVPLENGEIVVSLVNGRPGAMNFSYSPL-----LREFTKATNVRLRFLRTNTLLGHLMGK
           30        40        50             60        70         

         300       310       320           330       340       350 
KIAA09 IFVDELHLARYFYAISDIKVRGRCKCNLHATVC----VYDNSKLTCECEHNTTGPDCGKC
        . :     ::.:.:.::.. ::: :. :: .:      :  .: : :.::: :  : .:
KIAA19 ALRDPTVTRRYYYSIKDISIGGRCVCHGHADACDAKDPTDPFRLQCTCQHNTCGGTCDRC
      80        90       100       110       120       130         

             360       370       380                               
KIAA09 KKNYQGRPWSPGSYLPIPKGTANTCIPSISSIGSK                         
         ... .::.:..      ..:: :                                   
KIAA19 CPGFNQQPWKPAT-----ANSANECQSCNCYGHATDCYYDPEVDRRRASQSLDGTYQGGG
     140       150            160       170       180       190    




386 residues in 1 query   sequences
1987119 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:23:51 2008 done: Thu Dec 18 15:23:51 2008
 Total Scan time:  0.380 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]