hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18281293/chunk_1/iprscan-20080502-18281293.nocrc
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Query sequence: KIAA0976
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00055.8.fs Laminin N-terminal (Domain VI)               63.0    5.5e-19   2
PF00055.8.ls Laminin N-terminal (Domain VI)               37.0    1.8e-11   1
PF00053.14.fs Laminin EGF-like (Domains III and V)         32.4    9.6e-09   1
PF00053.14.ls Laminin EGF-like (Domains III and V)         31.9    2.1e-06   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00055.8.ls   1/1      72   317 ..     1   264 []    37.0  1.8e-11
PF00055.8.fs   1/2     114   233 ..    50   180 ..    47.8  2.3e-14
PF00055.8.fs   2/2     305   317 ..   252   264 .]    15.2  0.00019
PF00053.14.ls   1/1     319   363 ..     1    59 []    31.9  2.1e-06
PF00053.14.fs   1/1     319   363 ..     1    56 [.    32.4  9.6e-09

Alignments of top-scoring domains:
PF00055.8.ls: domain 1 of 1, from 72 to 317: score 37.0, E = 1.8e-11
                   *->CyPAtgNLainradrls.atsTCGlhsPEeyCilshlqpGRPVrdKk
                      C P+  +    ++ +l +   TCG + PE +C               
    KIAA0976    72    CQPESTDMTKYLKVKLDpPDITCGDP-PETFCAMGNPYM-------- 109  

                   Cfl.CDsnspnkrddnpnsHpisflvdttnpqrlttWWQSetmlnGvqYp
                   C  +CD+   +++    + Hp++   d        t WQS      ++Yp
    KIAA0976   110 CNNeCDAS--TPE----LAHPPELMFDFEGRHP-STFWQSA---TWKEYP 149  

                   n..nVTitLDLeaeFhiT.YvIikFkNtfRPEaamiieRSsDfGktWipY
                    +  V+itL   +    T+ + i+F  + RP   mi+e S+D G+tW pY
    KIAA0976   150 KplQVNITLSWSKTIELTdNIVITFE-SGRP-DQMILEKSLDYGRTWQPY 197  

                   qYYaydDsECeatYpgiprrp....irtgraeddvlCTSrYSdiePlteG
                   qYYa d   C++ +   p   ++ +  t   + +++CT +YS        
    KIAA0976   198 QYYATD---CLDAFHMDPKSVkdlsQHT---VLEIICTEEYSTGYTTNSK 241  

                   EViFsvLeGR......Psadif.......DpYSprlQewlkaTniRitLt
                    ++F + + R     +P   +  +  ++ D    +l  + ++T++Ri+L 
    KIAA0976   242 IIHFEIKD-RfaffagPRLRNMaslygqlDT-TKKLRDFFTVTDLRIRL- 288  

                   RLhTLGDnLldsSHRelkeLdpevlekYYYAIsDivVGG<-*
                    L+    + +          d   l +Y+YAIsDi V+G   
    KIAA0976   289 -LRPAVGEIFV---------DELHLARYFYAISDIKVRG    317  

PF00055.8.fs: domain 1 of 2, from 114 to 233: score 47.8, E = 2.3e-14
                   *->CDsnspnkrddnpnsHpisflvdttnpqrlttWWQSetmlnGvqYpn
                      CD+   +++    + Hp++   d        t WQS      ++Yp 
    KIAA0976   114    CDAS--TPE----LAHPPELMFDFEGRHP-STFWQSA---TWKEYPK 150  

                   ..nVTitLDLeaeFhiT.YvIikFkNtfRPEaamiieRSsDfGktWipYq
                   +  V+itL   +    T+ + i+F  + RP   mi+e S+D G+tW pYq
    KIAA0976   151 plQVNITLSWSKTIELTdNIVITFE-SGRP-DQMILEKSLDYGRTWQPYQ 198  

                   YYaydDsECeatYpgiprrp....irtgraeddvlCTSrYS<-*
                   YYa d   C++ +   p   ++ +  t   + +++CT +YS   
    KIAA0976   199 YYATD---CLDAFHMDPKSVkdlsQHT---VLEIICTEEYS    233  

PF00055.8.fs: domain 2 of 2, from 305 to 317: score 15.2, E = 0.00019
                   *->kYYYAIsDivVGG<-*
                      +Y+YAIsDi V+G   
    KIAA0976   305    RYFYAISDIKVRG    317  

PF00053.14.ls: domain 1 of 1, from 319 to 363: score 31.9, E = 2.1e-06
                   *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy
                      C Cn+h+      C  d+         C  C +n+tG++C  Ck +y
    KIAA0976   319    CKCNLHA----TVCVYDNS-----KLTCE-CEHNTTGPDCGKCKKNY 355  

                   yglpsgdpgqgC<-*
                    g+p+ +pg      
    KIAA0976   356 QGRPW-SPG---    363  

PF00053.14.fs: domain 1 of 1, from 319 to 363: score 32.4, E = 9.6e-09
                   *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy
                      C Cn+h+      C  d+         C  C +n+tG++C  Ck +y
    KIAA0976   319    CKCNLHA----TVCVYDNS-----KLTCE-CEHNTTGPDCGKCKKNY 355  

                   yglpsgdpg<-*
                    g+p+ +pg   
    KIAA0976   356 QGRPW-SPG    363  

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