hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18281293/chunk_1/iprscan-20080502-18281293.nocrc
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Query sequence: KIAA0976
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00136                                                  77.8    1.3e-18   1
SM00180                                                  29.4    0.00049   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00136    1/1      81   317 ..     1   282 []    77.8  1.3e-18
SM00180    1/1     319   376 ..     1    42 []    29.4  0.00049

Alignments of top-scoring domains:
SM00136: domain 1 of 1, from 81 to 317: score 77.8, E = 1.3e-18
                   *->agrprrCyPefvNlAfgRkrpvtAtsTCGeqkrprPErYCklvghta
                       +   ++ P+ +              TCG +    PE++C       
    KIAA0976    81    KYLKVKLDPPDI--------------TCGDP----PETFCAMG---- 105  

                   etdliWsllekprteqgkkCdlCDarqptkedprrsHpasnltDlnnpnn
                             +++  ++     CDa +p     +++Hp++++ D+ + + 
    KIAA0976   106 ---------NPYMCNNE-----CDASTP-----ELAHPPELMFDFEGRHP 136  

                   ptWWQSeplsnGpqyn.nVnLTLdLgkeFevt.YVilkFcPNSPRPesla
                    t WQS + +++p+ + +Vn+TL+  k  e+t+ + ++F   S RP + +
    KIAA0976   137 STFWQSATWKEYPK-PlQVNITLSWSKTIELTdNIVITFE--SGRP-DQM 182  

                   ilerStDfGkTWqPwQyySsqdaeCrrtFGrpprgaitkggneq..eviC
                   ile+S D+G+TWqP+Qyy+++   C + F ++p       + ++  e iC
    KIAA0976   183 ILEKSLDYGRTWQPYQYYATD---CLDAFHMDPKSVKDL-SQHTvlEIIC 228  

                   tseysdisPlegGeiafsl...........LegRPsae.dfdnSpvLQew
                   t eys     ++  i+f ++++     +++L +  s ++++d+  +L+++
    KIAA0976   229 TEEYSTGYTTNSKIIHFEIkdrfaffagprLRNMASLYgQLDTTKKLRDF 278  

                   vtATdiRvrltRLntplgddlmdvnskeleerDpevtrrYyYaIsDlaVG
                    t Td+R+rl+R++    ++ +          D+  + rY+YaIsD+ V+
    KIAA0976   279 FTVTDLRIRLLRPAV---GEIFV---------DELHLARYFYAISDIKVR 316  

                   G<-*
                   G   
    KIAA0976   317 G    317  

SM00180: domain 1 of 1, from 319 to 376: score 29.4, E = 0.00049
                   *->CdCnlpppvG..Cdp...tGqClnCkpnttGGrrCdderCapGyy..
                      C Cn    + + C ++++   C+ C +nttG + C   +C+ +y ++
    KIAA0976   319    CKCN---LHAtvCVYdnsKLTCE-CEHNTTG-PDCG--KCKKNYQgr 358  

                   ................gC<-*
                   + ++++  + ++++ ++C   
    KIAA0976   359 pwspgsylpipkgtanTC    376  

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