# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj07125.fasta.huge -Q ../query/KIAA0982.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0982, 502 aa
 vs ./tmplib.23663 library

1987003 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.0245+/-0.00453; mu= 7.4518+/- 0.303
 mean_var=138.7390+/-35.110, 0's: 0 Z-trim: 10  B-trim: 135 in 1/39
 Lambda= 0.108887

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0893  ( 974 res)   hk08702                     ( 974)  163 37.7  0.0046


>>KIAA0893  ( 974 res)   hk08702                          (974 aa)
 initn: 149 init1:  91 opt: 163  Z-score: 146.9  bits: 37.7 E(): 0.0046
Smith-Waterman score: 193;  19.615% identity (51.923% similar) in 520 aa overlap (10-494:466-973)

                                    10        20        30         
KIAA09                      PGHYLLEVMPTESASCSTARQTKQKRKSHSLSIR---RT
                                     :... .     .:.: .. .   .:   . 
KIAA08 VDAQRPIGSEILGQSSVSEKEPANGAQNPGPAKQEKNELRDSTEQFQEYYRQRLRYQQHL
         440       450       460       470       480       490     

         40        50         60        70        80        90     
KIAA09 NSSEQERTGLPRDMLEGQ-DSKLPSSVRSTLLELFGQIEREFENLYIENLELRREIDTLN
       ...::.:    . .:::  ...   . ...: : :  ..: ...:     ::   .: :.
KIAA08 EQKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQF--LNRSIQKLG----ELNIGMDGLG
         500       510       520       530             540         

         100       110       120       130       140       150     
KIAA09 ERLAAEGQAIDGAELSKGQLKTKASHSTSQLSQKLKTTYKASTSKIVSSFKTTTSRAACQ
       ....: .:  .:.. . .. .. .: .:   ... . :. ::. . .:. ..  :     
KIAA08 NEVSALNQQCNGSKGNGSNGSSVTSFTTPPQDSSQRLTHDASNIH-TSTPRNPGSTNHIP
     550       560       570       580       590        600        

         160       170       180       190       200         210   
KIAA09 LVKEYIGHRDGIWDVSVAKTQPVVLGTASADHTALLWSIETGKCLV--KYAGHVGSVNSI
       ...:     .   . :: :  :.  . .: ...    . .. : .:  .    . .: ..
KIAA08 FLEESPCGSQISSEHSVIKP-PLGDSPGSLSRSKGEEDDKSKKQFVCINILEDTQAVRAV
      610       620        630       640       650       660       

           220       230        240              250       260     
KIAA09 KFHPSEQLALTASGDQTAHIWRYA-VQLP----TP-QPVA--DTSISGEDEVECSDKDEP
        :::.  :  ..:...: ..  :  :  :    :: :::.    .   .  . :   .  
KIAA08 AFHPAGGLYAVGSNSKTLRVCAYPDVIDPSAHETPKQPVVRFKRNKHHKGSIYCVAWSPC
       670       680       690       700       710       720       

         270       280                   290       300          310
KIAA09 DLDGDVSSDSPTIRV------------PLTSLKSHQGVVIASDWLVG---GKQAVTASWD
            ..:..  ..:            :   .. :.:..    .. :   :   . ..  
KIAA08 GQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGA
       730       740       750       760       770       780       

                320       330       340       350       360        
KIAA09 RTANLY--DVETSELVHSLTGHDQELTHCCTHPTQRLVVTSSRDTTFRLWDFRDPSIHSV
          :.:  : . .. .:.:.::  ..    :  .  .....:.: : :.::.: ::   :
KIAA08 GDCNIYTTDCQRGQGLHALSGHTGHILALYTW-SGWMIASGSQDKTVRFWDLRVPSCVRV
       790       800       810        820       830       840      

        370       380        390       400       410       420     
KIAA09 --NVFQGHTDTVTS-AVFTVGDNVVSGSDDRTVKVWDLKNMRSPIATIRTDSAINRINVC
         ..:.:  ..:.: ::   :  ...:..: .  ..:... :   .    .: .  .   
KIAA08 VGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFS
        850       860       870       880       890       900      

         430       440       450       460        470       480    
KIAA09 VGQKIIALPHDNRQVRLFDMSGVRLARLPRSSRQGHR-RMVCCSAWSEDHPVCNLFTCGF
        : . .     . .... :..:    .::      :. ... :   ..:    .... . 
KIAA08 PGAHYLLTGSYDMKIKVTDLQGDLTKQLPIMVVGEHKDKVIQCRWHTQD---LSFLSSSA
        910       920       930       940       950          960   

          490       500  
KIAA09 DRQAIGWNINIPALLQEK
       :: .  :. :        
KIAA08 DRTVTLWTYNG       
           970           




502 residues in 1 query   sequences
1987003 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:24:05 2008 done: Thu Dec 18 15:24:06 2008
 Total Scan time:  0.460 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]