hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18381197/chunk_1/iprscan-20080502-18381197.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0982 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00400.22.ls WD domain, G-beta repeat 181.8 1.6e-51 6 PF00400.22.fs WD domain, G-beta repeat 169.9 5.9e-48 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00400.22.fs 1/6 154 193 .. 1 38 [] 26.1 2.2e-06 PF00400.22.ls 1/6 154 193 .. 1 38 [] 28.1 2.9e-05 PF00400.22.ls 2/6 197 235 .. 1 38 [] 41.7 2.4e-09 PF00400.22.fs 2/6 197 235 .. 1 38 [] 39.7 3.2e-10 PF00400.22.fs 3/6 279 317 .. 1 38 [] 20.8 6.9e-05 PF00400.22.ls 3/6 279 317 .. 1 38 [] 22.8 0.0012 PF00400.22.fs 4/6 321 359 .. 1 38 [] 34.8 7.9e-09 PF00400.22.ls 4/6 321 359 .. 1 38 [] 36.7 7.2e-08 PF00400.22.fs 5/6 365 402 .. 1 38 [] 35.2 6.2e-09 PF00400.22.ls 5/6 365 402 .. 1 38 [] 37.1 5.6e-08 PF00400.22.fs 6/6 452 492 .. 1 38 [] 13.4 0.0083 Alignments of top-scoring domains: PF00400.22.fs: domain 1 of 6, from 154 to 193: score 26.1, E = 2.2e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++++++ gH +++++v+++ ++ +l ++S+D+t +W+ KIAA0982 154 CQLVkEYiGHRDGIWDVSVAKTQPVVLGTASADHTALLWS 193 PF00400.22.ls: domain 1 of 6, from 154 to 193: score 28.1, E = 2.9e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++++++ gH +++++v+++ ++ +l ++S+D+t +W+ KIAA0982 154 CQLVkEYiGHRDGIWDVSVAKTQPVVLGTASADHTALLWS 193 PF00400.22.ls: domain 2 of 6, from 197 to 235: score 41.7, E = 2.4e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+c+ + gH ++V++++f+p+ +l +++S D t +iW KIAA0982 197 GKCLvKYaGHVGSVNSIKFHPS-EQLALTASGDQTAHIWR 235 PF00400.22.fs: domain 2 of 6, from 197 to 235: score 39.7, E = 3.2e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+c+ + gH ++V++++f+p+ +l +++S D t +iW KIAA0982 197 GKCLvKYaGHVGSVNSIKFHPS-EQLALTASGDQTAHIWR 235 PF00400.22.fs: domain 3 of 6, from 279 to 317: score 20.8, E = 6.9e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++++l+ H++ V + ++ g++ +++S+D+t ++d KIAA0982 279 RVPLtSLkSHQGVVIASDWLVG-GKQAVTASWDRTANLYD 317 PF00400.22.ls: domain 3 of 6, from 279 to 317: score 22.8, E = 0.0012 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++++l+ H++ V + ++ g++ +++S+D+t ++d KIAA0982 279 RVPLtSLkSHQGVVIASDWLVG-GKQAVTASWDRTANLYD 317 PF00400.22.fs: domain 4 of 6, from 321 to 359: score 34.8, E = 7.9e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* e++++l+gH t ++ +p ++l++++SrD t ++Wd KIAA0982 321 SELVhSLtGHDQELTHCCTHPT-QRLVVTSSRDTTFRLWD 359 PF00400.22.ls: domain 4 of 6, from 321 to 359: score 36.7, E = 7.2e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* e++++l+gH t ++ +p ++l++++SrD t ++Wd KIAA0982 321 SELVhSLtGHDQELTHCCTHPT-QRLVVTSSRDTTFRLWD 359 PF00400.22.fs: domain 5 of 6, from 365 to 402: score 35.2, E = 6.2e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++v++gHt+tVt+ f ++sgS+D+t+k+Wd KIAA0982 365 IHSVnVFqGHTDTVTSAVFTVG--DNVVSGSDDRTVKVWD 402 PF00400.22.ls: domain 5 of 6, from 365 to 402: score 37.1, E = 5.6e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++v++gHt+tVt+ f ++sgS+D+t+k+Wd KIAA0982 365 IHSVnVFqGHTDTVTSAVFTVG--DNVVSGSDDRTVKVWD 402 PF00400.22.fs: domain 6 of 6, from 452 to 492: score 13.4, E = 0.0083 *->geck.vl.gHtstVtcvafspd.sgpllasgSrDgtikiWd<-* + + ++ +gH V+c a+s d + l++++ D+ W+ KIAA0982 452 RLPRsSRqGHRRMVCCSAWSEDhPVCNLFTCGFDRQAIGWN 492 //