hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18381197/chunk_1/iprscan-20080502-18381197.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0982 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00320 184.7 8.6e-51 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00320 1/6 153 193 .. 1 46 [] 26.0 0.0054 SM00320 2/6 196 235 .. 1 46 [] 42.1 7.5e-08 SM00320 3/6 278 317 .. 1 46 [] 21.6 0.11 SM00320 4/6 320 359 .. 1 46 [] 41.9 8.4e-08 SM00320 5/6 364 402 .. 1 46 [] 36.3 4e-06 SM00320 6/6 451 492 .. 1 46 [] 16.8 1.1 Alignments of top-scoring domains: SM00320: domain 1 of 6, from 153 to 193: score 26.0, E = 0.0054 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +l++++ gH++ ++++v++ + p +l ++s D+t lW KIAA0982 153 AcQLVKEYIGHRD--GIWDVSVAKTQ-----PVVLGTASaDHTALLW 192 d<-* + KIAA0982 193 S 193 SM00320: domain 2 of 6, from 196 to 235: score 42.1, E = 7.5e-08 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t+k+l ++ gH g +V+s++f+p+ +l +++s+D t ++W KIAA0982 196 TgKCLVKYAGHVG--SVNSIKFHPSE------QLALTASgDQTAHIW 234 d<-* KIAA0982 235 R 235 SM00320: domain 3 of 6, from 278 to 317: score 21.6, E = 0.11 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + +l +lk H+g V + ++ g ++ +++s+D+t l+ KIAA0982 278 IrVPLTSLKSHQG--VVIASDWLVGG------KQAVTASwDRTANLY 316 d<-* d KIAA0982 317 D 317 SM00320: domain 4 of 6, from 320 to 359: score 41.9, E = 8.4e-08 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t++l+++l+gH++ + t+++ +p+ +l++++s+D t rlW KIAA0982 320 TsELVHSLTGHDQ--ELTHCCTHPTQ------RLVVTSSrDTTFRLW 358 d<-* d KIAA0982 359 D 359 SM00320: domain 5 of 6, from 364 to 402: score 36.3, E = 4e-06 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + +++gHt+ Vts f + ++sgs+D+t+++W KIAA0982 364 SiHSVNVFQGHTD--TVTSAVFTVG-------DNVVSGSdDRTVKVW 401 d<-* d KIAA0982 402 D 402 SM00320: domain 6 of 6, from 451 to 492: score 16.8, E = 1.1 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + ++ +gH+ V++ a+s d+ + l++++ D++ W KIAA0982 451 ArLPRSSRQGHRR--MVCCSAWSEDH----PVCNLFTCGfDRQAIGW 491 d<-* + KIAA0982 492 N 492 //