hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18430197/chunk_1/iprscan-20080502-18430197.nocrc
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Query sequence: KIAA0985
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF02318.7.ls   Rabphilin-3A effector domain             623.6   1.5e-184   1
PF02318.7.fs   Rabphilin-3A effector domain             621.9   5.2e-184   1
PF00168.20.fs  C2 domain                                256.0    1.5e-75   2
PF00168.20.ls  C2 domain                                260.0    4.5e-75   2

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF02318.7.fs     1/1       4   276 ..     1   310 []   621.9 5.2e-184
PF02318.7.ls     1/1       4   276 ..     1   310 []   623.6 1.5e-184
PF00168.20.fs    1/2     412   501 ..     1    88 []   135.8  8.2e-40
PF00168.20.ls    1/2     412   501 ..     1    88 []   137.8  2.8e-38
PF00168.20.ls    2/2     570   658 ..     1    88 []   122.2  1.3e-33
PF00168.20.fs    2/2     570   658 ..     1    88 []   120.2  3.5e-35

Alignments of top-scoring domains:
PF02318.7.fs: domain 1 of 1, from 4 to 276: score 621.9, E = 5.2e-184
                   *->MaDtvvsstqdkWvcPsDRPLqlalraqLqaGWSVhtGaqARSPTdk
                      M+Dtv+s   ++W++PsDRPLq+++++qLqaGWSVh+G q     d+
    KIAA0985     4    MTDTVFSNSSNRWMYPSDRPLQSNDKEQLQAGWSVHPGGQ----PDR 46   

                   qrktesLtaeEkEvIqkViarAEkleslEQqRIGrLVdRLEtMrknvaGn
                   qrk+e+Lt+eEkE+I++ViarAEk+e +EQ+RIGrLVdRLE MrknvaG+
    KIAA0985    47 QRKQEELTDEEKEIINRVIARAEKMEEMEQERIGRLVDRLENMRKNVAGD 96   

                   GVsrCLLCgeeLGlLgSkSYAvvCkDCrKkVCtkNCGVEtsdVNqttgkk
                   GV+rC+LCge+LG+LgS++  vvC+DC+K+VCtk CGVEt +      + 
    KIAA0985    97 GVNRCILCGEQLGMLGSAC--VVCEDCKKNVCTK-CGVETNN------RL 137  

                   epvwLCKICsEqREVLWKrSGAWFYKglPkfvLPlktPqrkddplFrPly
                   + vwLCKIC EqREV WKrSGAWF+Kg+Pk+vLP+++P++k++p+ +P  
    KIAA0985   138 HSVWLCKICIEQREV-WKRSGAWFFKGFPKQVLPQPMPIKKTKPQ-QPVS 185  

                   vpaTeeqplpeessaartParGRvvssDsDsDsDLsssdlEDRraPggak
                   +pa  eqp pe  ++ar+ParG                d EDRr Pg++ 
    KIAA0985   186 EPAAPEQPAPEPKHPARAPARG----------------DSEDRRGPGQKT 219  

                   GpkltkapgdSSgsmetprWaSpArmsstlldsegWdlGsetGAGdTsrl
                   Gp++ +apg++  +++ +r aS+Armss  +dse+Wd+   +GAGd sr+
    KIAA0985   220 GPDPASAPGRGNYGPPVRR-ASEARMSSSSRDSESWDH--SGGAGDSSRS 266  

                   PnGetllRRetsv<-*
                   P G   lRR++sv   
    KIAA0985   267 PAG---LRRANSV    276  

PF02318.7.ls: domain 1 of 1, from 4 to 276: score 623.6, E = 1.5e-184
                   *->MaDtvvsstqdkWvcPsDRPLqlalraqLqaGWSVhtGaqARSPTdk
                      M+Dtv+s   ++W++PsDRPLq+++++qLqaGWSVh+G q     d+
    KIAA0985     4    MTDTVFSNSSNRWMYPSDRPLQSNDKEQLQAGWSVHPGGQ----PDR 46   

                   qrktesLtaeEkEvIqkViarAEkleslEQqRIGrLVdRLEtMrknvaGn
                   qrk+e+Lt+eEkE+I++ViarAEk+e +EQ+RIGrLVdRLE MrknvaG+
    KIAA0985    47 QRKQEELTDEEKEIINRVIARAEKMEEMEQERIGRLVDRLENMRKNVAGD 96   

                   GVsrCLLCgeeLGlLgSkSYAvvCkDCrKkVCtkNCGVEtsdVNqttgkk
                   GV+rC+LCge+LG+LgS++  vvC+DC+K+VCtk CGVEt +      + 
    KIAA0985    97 GVNRCILCGEQLGMLGSAC--VVCEDCKKNVCTK-CGVETNN------RL 137  

                   epvwLCKICsEqREVLWKrSGAWFYKglPkfvLPlktPqrkddplFrPly
                   + vwLCKIC EqREV WKrSGAWF+Kg+Pk+vLP+++P++k++p+ +P  
    KIAA0985   138 HSVWLCKICIEQREV-WKRSGAWFFKGFPKQVLPQPMPIKKTKPQ-QPVS 185  

                   vpaTeeqplpeessaartParGRvvssDsDsDsDLsssdlEDRraPggak
                   +pa  eqp pe  ++ar+ParG                d EDRr Pg++ 
    KIAA0985   186 EPAAPEQPAPEPKHPARAPARG----------------DSEDRRGPGQKT 219  

                   GpkltkapgdSSgsmetprWaSpArmsstlldsegWdlGsetGAGdTsrl
                   Gp++ +apg++  +++ +r aS+Armss  +dse+Wd+   +GAGd sr+
    KIAA0985   220 GPDPASAPGRGNYGPPVRR-ASEARMSSSSRDSESWDH--SGGAGDSSRS 266  

                   PnGetllRRetsv<-*
                   P G   lRR++sv   
    KIAA0985   267 PAG---LRRANSV    276  

PF00168.20.fs: domain 1 of 2, from 412 to 501: score 135.8, E = 8.2e-40
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L +t+i+Ak+L+p+D +ng++DPYVk++l++  ++++k +Tk+ ++t
    KIAA0985   412    LQCTIIKAKGLKPMD-SNGLADPYVKLHLLPGASKsNKLRTKTLRNT 457  

                   lNPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgrddflGevs<-*
                    NP+WNEt+++++++++d+q++tL+i+V+D+d+fg+++f+Ge++   
    KIAA0985   458 RNPIWNETLVYHgITDEDMQRkTLRISVCDEDKFGHNEFIGETR    501  

PF00168.20.ls: domain 1 of 2, from 412 to 501: score 137.8, E = 2.8e-38
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L +t+i+Ak+L+p+D +ng++DPYVk++l++  ++++k +Tk+ ++t
    KIAA0985   412    LQCTIIKAKGLKPMD-SNGLADPYVKLHLLPGASKsNKLRTKTLRNT 457  

                   lNPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgrddflGevs<-*
                    NP+WNEt+++++++++d+q++tL+i+V+D+d+fg+++f+Ge++   
    KIAA0985   458 RNPIWNETLVYHgITDEDMQRkTLRISVCDEDKFGHNEFIGETR    501  

PF00168.20.ls: domain 2 of 2, from 570 to 658: score 122.2, E = 1.3e-33
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L V +i++ +L+++D +ng sDP+Vk++l +d +++ k+kT ++kkt
    KIAA0985   570    LIVGIIRCVHLAAMD-ANGYSDPFVKLWLKPDMGKkAKHKTQIKKKT 615  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   lNP++NE+F +++ + dl++++L i+V+Dyd  +++d +G ++   
    KIAA0985   616 LNPEFNEEFFYDIKHSDLAKkSLDISVWDYDIGKSNDYIGGCQ    658  

PF00168.20.fs: domain 2 of 2, from 570 to 658: score 120.2, E = 3.5e-35
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt
                      L V +i++ +L+++D +ng sDP+Vk++l +d +++ k+kT ++kkt
    KIAA0985   570    LIVGIIRCVHLAAMD-ANGYSDPFVKLWLKPDMGKkAKHKTQIKKKT 615  

                   lNPvWNEtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   lNP++NE+F +++ + dl++++L i+V+Dyd  +++d +G ++   
    KIAA0985   616 LNPEFNEEFFYDIKHSDLAKkSLDISVWDYDIGKSNDYIGGCQ    658  

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