hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18462020/chunk_1/iprscan-20080502-18462020.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0987 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00295 282.7 2.8e-80 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00295 1/1 134 329 .. 1 232 [] 282.7 2.8e-80 Alignments of top-scoring domains: SM00295: domain 1 of 1, from 134 to 329: score 282.7, E = 2.8e-80 *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey +pk + +kV lldg+ +++ v++++++++l+++vc++l+l +e++y KIAA0987 134 KPKSMQCKVILLDGSEYTCDVEKRSRGQVLFDKVCEHLNL--LEKDY 178 FgLqfedkdedshWldpaktilkqdvkspksepltlyFRvkFyppdwhgp FgL + d +++ Wldpak+i+kq+++ + + ++F vkFyppd KIAA0987 179 FGLTYRDAENQKNWLDPAKEIKKQVRS----GAWHFSFNVKFYPPD---- 220 peqlkeDptrynllylQvrddilsGrlpcpseeeallLAaLalqaefGdy p ql+eD+try +l+lQ+rddi+sGrlpc+ + +++lL+++ +q+e+Gdy KIAA0987 221 PAQLSEDITRY-YLCLQLRDDIVSGRLPCS-FVTLALLGSYTVQSELGDY 268 dpeeeekkkslkhvakelslkrflPkqlldsikasflqiqltlkewrerI dp ++ + ++s++rf P+ +ke+++++ KIAA0987 269 DPD--------ECGSDYISEFRFAPNH---------------TKELEDKV 295 velhkehaglspeeaklkYLelarrLpptYGvelF<-* elhk h+g++p+ea++++Le+a++L +YGv+l+ KIAA0987 296 IELHKSHRGMTPAEAEMHFLENAKKLS-MYGVDLH 329 //