# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk05377.fasta.huge -Q ../query/KIAA0989.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0989, 859 aa
 vs ./tmplib.23663 library

1986646 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.1953+/-0.0105; mu= -4.5316+/- 0.710
 mean_var=483.3255+/-117.042, 0's: 0 Z-trim: 7  B-trim: 0 in 0/40
 Lambda= 0.058338

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1071  ( 675 res)   hj05664s2                   ( 675) 1261 120.9 4.8e-28


>>KIAA1071  ( 675 res)   hj05664s2                        (675 aa)
 initn: 1278 init1: 787 opt: 1261  Z-score: 595.4  bits: 120.9 E(): 4.8e-28
Smith-Waterman score: 1314;  50.641% identity (75.641% similar) in 468 aa overlap (378-819:4-466)

       350       360       370       380       390       400       
KIAA09 QEHPPPPHPAALGHGPLSSLSPPAVEGPVSAQASSATSGSAHLAQMEAVLRENAR---LQ
                                     :: :::.   .    .  : : .     :.
KIAA10                            MPRAQPSSASYQPVPADPFAIVSRAQQMVEILS
                                          10        20        30   

          410       420       430       440       450       460    
KIAA09 RDNERLQRELESSAEKAGRIEKLESEIQRLSEAHESLTRASSKREALEKTMRNKMDSEMR
        .:. :..:::.  ::..:..:.:.::::.:::.:.:...:::::::::.::::...:.:
KIAA10 DENRNLRQELEGCYEKVARLQKVETEIQRVSEAYENLVKSSSKREALEKAMRNKLEGEIR
            40        50        60        70        80        90   

          470       480       490       500       510       520    
KIAA09 RLQDFNRDLRERLESANRRLASKTQEAQAGSQDMVAKLLAQSYEQQQEQEKLEREMALLR
       :..:::::::::::.::..:: :  :..  ..  ...:.:.. :.:.:.:::: :.:  :
KIAA10 RMHDFNRDLRERLETANKQLAEKEYEGSEDTRKTISQLFAKNKESQREKEKLEAELATAR
           100       110       120       130       140       150   

          530       540       550       560       570       580    
KIAA09 GAIEDQRRRAELLEQALGNAQGRAARAEEELRKKQAYVEKVERLQQALGQLQAACEKREQ
       .. :::::. :. .:::.:::..... ::::.:::.::.:::..:::: :::::::::::
KIAA10 STNEDQRRHIEIRDQALSNAQAKVVKLEEELKKKQVYVDKVEKMQQALVQLQAACEKREQ
           160       170       180       190       200       210   

          590       600       610       620       630       640    
KIAA09 LELRLRTRLEQELKALRAQQRQAGAPGGSSGSGGSPELSALRLSEQLREKEEQILALEAD
       :: :::::::.::..:: ::::     :.    .  : .:  : : ::::::.:::::::
KIAA10 LEHRLRTRLERELESLRIQQRQ-----GNCQPTNVSEYNAAALMELLREKEERILALEAD
           220       230            240       250       260        

          650       660       670       680       690              
KIAA09 MTKWEQKYLEERAMRQFAMDAAATAAAQRDTTLIRHSPQPSPSSSFN-------EGLLTG
       ::::::::::: .::.::.:::::.:::::::.: :::. : .....       : .: .
KIAA10 MTKWEQKYLEENVMRHFALDAAATVAAQRDTTVISHSPNTSYDTALEARIQKEEEEILMA
      270       280       290       300       310       320        

       700       710       720       730       740        750      
KIAA09 GHRHQEMESRLKVLHAQILEKDAVIKVLQQRSRRDPGKAIQGS-LRPAKSVPSVFAAAAA
       ..:  .::.:.:.:::::.::::.:::::::::..:.:. : : .:::::. :.  :...
KIAA10 NKRCLDMEGRIKTLHAQIIEKDAMIKVLQQRSRKEPSKTEQLSCMRPAKSLMSISNAGSG
      330       340       350       360       370       380        

        760          770       780                 790         800 
KIAA09 GTQGWQGLSSS---ERQTADAPARLTT---------ADRAP-TEEPVVTAPP--AAHAKH
         .  . :..:   :..  :   . .          :. .: :  ::  . :  .::.: 
KIAA10 LLSHSSTLTGSPIMEEKRDDKSWKGSLGILLGGDYRAEYVPSTPSPVPPSTPLLSAHSKT
      390       400       410       420       430       440        

             810       820       830       840       850           
KIAA09 GSRDGSTQTDGPPDSTSTCLPPEPDSLLGCSSSQRAASLDSVATSRVQDLSDMVEILI  
       :::: ::::.   .:..:                                          
KIAA10 GSRDCSTQTERGTESNKTAAVAPISVPAPVAAAATAAAITATAATITTTMVAAAPVAVAA
      450       460       470       480       490       500        




859 residues in 1 query   sequences
1986646 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:24:20 2008 done: Thu Dec 18 15:24:21 2008
 Total Scan time:  0.640 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]