hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18575815/chunk_1/iprscan-20080502-18575815.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0994 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03068.6.fs Protein-arginine deiminase (PAD) 898.2 8.9e-278 1 PF03068.6.ls Protein-arginine deiminase (PAD) 900.1 8.9e-268 1 PF08527.1.fs Protein-arginine deiminase (PAD) middle doma 386.1 2e-119 1 PF08527.1.ls Protein-arginine deiminase (PAD) middle doma 388.0 1.3e-113 1 PF08526.1.ls Protein-arginine deiminase (PAD) N-terminal 213.1 5.9e-61 1 PF08526.1.fs Protein-arginine deiminase (PAD) N-terminal 211.1 2.3e-60 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08526.1.fs 1/1 22 135 .. 1 114 [] 211.1 2.3e-60 PF08526.1.ls 1/1 22 135 .. 1 114 [] 213.1 5.9e-61 PF08527.1.fs 1/1 137 295 .. 1 173 [] 386.1 2e-119 PF08527.1.ls 1/1 137 295 .. 1 173 [] 388.0 1.3e-113 PF03068.6.fs 1/1 300 686 .] 1 386 [] 898.2 8.9e-278 PF03068.6.ls 1/1 300 686 .] 1 386 [] 900.1 8.9e-268 Alignments of top-scoring domains: PF08526.1.fs: domain 1 of 1, from 22 to 135: score 211.1, E = 2.3e-60 *->MAqqRtVrLslesPThAVCVlGtetivDIySsaPkGAksFsVsgSpG M+++RtVrL+++s+++AV+VlGt +++D+yS+aP+GA +Fs+++S+ KIAA0994 22 MLRERTVRLQYGSRVEAVYVLGTYLWTDVYSAAPAGAQTFSLKHSEH 68 VkVyVvhdGpervkepaGkarWPLdpglevvlsMkaaSkelgDqKVriSY V V+Vv+dG+++++ ++Gk+rW L+p+++++++M +aS+e++++KV+++Y KIAA0994 69 VWVEVVRDGEAEEVATNGKQRWLLSPSTTLRVTMSQASTEASSDKVTVNY 118 ygeqekaPlarAlLYLT<-* y e+++ P+++A+L+LT KIAA0994 119 YDEEGSIPIDQAGLFLT 135 PF08526.1.ls: domain 1 of 1, from 22 to 135: score 213.1, E = 5.9e-61 *->MAqqRtVrLslesPThAVCVlGtetivDIySsaPkGAksFsVsgSpG M+++RtVrL+++s+++AV+VlGt +++D+yS+aP+GA +Fs+++S+ KIAA0994 22 MLRERTVRLQYGSRVEAVYVLGTYLWTDVYSAAPAGAQTFSLKHSEH 68 VkVyVvhdGpervkepaGkarWPLdpglevvlsMkaaSkelgDqKVriSY V V+Vv+dG+++++ ++Gk+rW L+p+++++++M +aS+e++++KV+++Y KIAA0994 69 VWVEVVRDGEAEEVATNGKQRWLLSPSTTLRVTMSQASTEASSDKVTVNY 118 ygeqekaPlarAlLYLT<-* y e+++ P+++A+L+LT KIAA0994 119 YDEEGSIPIDQAGLFLT 135 PF08527.1.fs: domain 1 of 1, from 137 to 295: score 386.1, E = 2e-119 *->VdISLdvDtgRtGkvkPakslvDKrtWtWGPdGqGAILLVNCDRDdp ++ISLdvD++R+G v+ k++++K++WtWGP+GqGAILLVNCDR++p KIAA0994 137 IEISLDVDADRDGVVE--KNNPKKASWTWGPEGQGAILLVNCDRETP 181 kSsamGDssePqsqLtDleDdkVlsleDLqDMSpMvLsTkGPddLFdgHk +++++ D++D+kV+s+eDL+DMS+M+L+TkGPd+L++g++ KIAA0994 182 WLPKE-----------DCRDEKVYSKEDLKDMSQMILRTKGPDRLPAGYE 220 LVLhvsfsDsdkVrVFyatggekslsrYkvVLGPqklSYeVerlgGehei +VL++s+sDsdkV+VFy++++ ++++rY+++LG++kl+++V+++gG++e+ KIAA0994 221 IVLYISMSDSDKVGVFYVENP-FFGQRYIHILGRRKLYHVVKYTGGSAEL 269 dFYVEGLaFPDasFsGLvslhvSLLD<-* F+VEGL+FPD++FsGLvs+hvSLL+ KIAA0994 270 LFFVEGLCFPDEGFSGLVSIHVSLLE 295 PF08527.1.ls: domain 1 of 1, from 137 to 295: score 388.0, E = 1.3e-113 *->VdISLdvDtgRtGkvkPakslvDKrtWtWGPdGqGAILLVNCDRDdp ++ISLdvD++R+G v+ k++++K++WtWGP+GqGAILLVNCDR++p KIAA0994 137 IEISLDVDADRDGVVE--KNNPKKASWTWGPEGQGAILLVNCDRETP 181 kSsamGDssePqsqLtDleDdkVlsleDLqDMSpMvLsTkGPddLFdgHk +++++ D++D+kV+s+eDL+DMS+M+L+TkGPd+L++g++ KIAA0994 182 WLPKE-----------DCRDEKVYSKEDLKDMSQMILRTKGPDRLPAGYE 220 LVLhvsfsDsdkVrVFyatggekslsrYkvVLGPqklSYeVerlgGehei +VL++s+sDsdkV+VFy++++ ++++rY+++LG++kl+++V+++gG++e+ KIAA0994 221 IVLYISMSDSDKVGVFYVENP-FFGQRYIHILGRRKLYHVVKYTGGSAEL 269 dFYVEGLaFPDasFsGLvslhvSLLD<-* F+VEGL+FPD++FsGLvs+hvSLL+ KIAA0994 270 LFFVEGLCFPDEGFSGLVSIHVSLLE 295 PF03068.6.fs: domain 1 of 1, from 300 to 686: score 898.2, E = 8.9e-278 *->elpetliFtDtvvFRvAPWimtPntlpPlevyvCsvkdnekFlkevs ++p t+iFtDtv+FR+APWimtPn+lpP++v+vC++kdn+ Flkev+ KIAA0994 300 DIPLTPIFTDTVIFRIAPWIMTPNILPPVSVFVCCMKDNYLFLKEVK 346 elaekakCkltiCpqeenrnDrWiqDEmElGYiqAPHKtlPvvfDsPRdr +l+ek++C+l++C+q+ nr+DrWiqDE+E+GYi+APHK++Pvv+DsPRd+ KIAA0994 347 NLVEKTNCELKVCFQYLNRGDRWIQDEIEFGYIEAPHKGFPVVLDSPRDG 396 gLkdFpvkrilGpdFGYvtreiqeegvsgLDsFGnLevsPPvtvrgkEYP +LkdFpvk++lGpdFGYvtre+ +e+v++LDsFGnLevsPPvtv+gk YP KIAA0994 397 NLKDFPVKELLGPDFGYVTREPLFESVTSLDSFGNLEVSPPVTVNGKTYP 446 LGRiLiGssfpksegRrmakvvrdFLkAqqvqapveLysDWLsvGHvDEF LGRiLiGssfp s+gRrm+kvvrdFLkAqqvqapveLysDWL+vGHvDEF KIAA0994 447 LGRILIGSSFPLSGGRRMTKVVRDFLKAQQVQAPVELYSDWLTVGHVDEF 496 lsFvPapdkkgFRLLlaspsaCyqlfqEkqeeGyGeallFeGlkkkkkkr +sFvP+p+ k F LL+as+saCy+lf+Ekq+ G+Gea +F+Gl ++++kr KIAA0994 497 MSFVPIPGTKKFLLLMASTSACYKLFREKQKDGHGEAIMFKGLGGMSSKR 546 isineiLsnesLrkenayvqkCidWnRevLKrELgLaEsDiiDiPqLFkl i+in+iLsnesL +en y+q+C+dWnR++LK+ELgL+E+DiiD+P+LFk+ KIAA0994 547 ITINKILSNESLVQENLYFQRCLDWNRDILKKELGLTEQDIIDLPALFKM 596 kenk.AeAfFPdmvnmlvLgkhLGiPKPfGPiingrCCLEekvrsLLePL +e ++A+AfFP+mvnm+vL+k+LGiPKPfGP+++++CCLE +vr+LLePL KIAA0994 597 DEDHrARAFFPNMVNMIVLDKDLGIPKPFGPQVEEECCLEMHVRGLLEPL 646 GLkCtFidDflsYHkllGEvHCGtnvRRkPFaFkWWnmvP<-* GL+CtFidD+++YHk+lGEvHCGtnvRRkPF+FkWW+mvP KIAA0994 647 GLECTFIDDISAYHKFLGEVHCGTNVRRKPFTFKWWHMVP 686 PF03068.6.ls: domain 1 of 1, from 300 to 686: score 900.1, E = 8.9e-268 *->elpetliFtDtvvFRvAPWimtPntlpPlevyvCsvkdnekFlkevs ++p t+iFtDtv+FR+APWimtPn+lpP++v+vC++kdn+ Flkev+ KIAA0994 300 DIPLTPIFTDTVIFRIAPWIMTPNILPPVSVFVCCMKDNYLFLKEVK 346 elaekakCkltiCpqeenrnDrWiqDEmElGYiqAPHKtlPvvfDsPRdr +l+ek++C+l++C+q+ nr+DrWiqDE+E+GYi+APHK++Pvv+DsPRd+ KIAA0994 347 NLVEKTNCELKVCFQYLNRGDRWIQDEIEFGYIEAPHKGFPVVLDSPRDG 396 gLkdFpvkrilGpdFGYvtreiqeegvsgLDsFGnLevsPPvtvrgkEYP +LkdFpvk++lGpdFGYvtre+ +e+v++LDsFGnLevsPPvtv+gk YP KIAA0994 397 NLKDFPVKELLGPDFGYVTREPLFESVTSLDSFGNLEVSPPVTVNGKTYP 446 LGRiLiGssfpksegRrmakvvrdFLkAqqvqapveLysDWLsvGHvDEF LGRiLiGssfp s+gRrm+kvvrdFLkAqqvqapveLysDWL+vGHvDEF KIAA0994 447 LGRILIGSSFPLSGGRRMTKVVRDFLKAQQVQAPVELYSDWLTVGHVDEF 496 lsFvPapdkkgFRLLlaspsaCyqlfqEkqeeGyGeallFeGlkkkkkkr +sFvP+p+ k F LL+as+saCy+lf+Ekq+ G+Gea +F+Gl ++++kr KIAA0994 497 MSFVPIPGTKKFLLLMASTSACYKLFREKQKDGHGEAIMFKGLGGMSSKR 546 isineiLsnesLrkenayvqkCidWnRevLKrELgLaEsDiiDiPqLFkl i+in+iLsnesL +en y+q+C+dWnR++LK+ELgL+E+DiiD+P+LFk+ KIAA0994 547 ITINKILSNESLVQENLYFQRCLDWNRDILKKELGLTEQDIIDLPALFKM 596 kenk.AeAfFPdmvnmlvLgkhLGiPKPfGPiingrCCLEekvrsLLePL +e ++A+AfFP+mvnm+vL+k+LGiPKPfGP+++++CCLE +vr+LLePL KIAA0994 597 DEDHrARAFFPNMVNMIVLDKDLGIPKPFGPQVEEECCLEMHVRGLLEPL 646 GLkCtFidDflsYHkllGEvHCGtnvRRkPFaFkWWnmvP<-* GL+CtFidD+++YHk+lGEvHCGtnvRRkPF+FkWW+mvP KIAA0994 647 GLECTFIDDISAYHKFLGEVHCGTNVRRKPFTFKWWHMVP 686 //