hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19025619/chunk_1/iprscan-20080502-19025619.nocrc
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Query sequence: KIAA0997
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          89.0    1.4e-23   6
PF00096.16.fs Zinc finger, C2H2 type                          77.2    4.8e-20   6
PF00651.21.fs BTB/POZ domain                                  64.2      2e-17   1
PF00651.21.ls BTB/POZ domain                                  65.9    1.2e-16   1
PF07754.2.fs Domain of unknown function (DUF1610)            22.7    4.7e-05   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00651.21.fs   1/1      16   122 ..     1   135 []    64.2    2e-17
PF00651.21.ls   1/1      16   122 ..     1   135 []    65.9  1.2e-16
PF00096.16.ls   4/6     536   558 ..     1    24 []    23.3  0.00083
PF00096.16.ls   6/6     608   630 ..     1    24 []    20.8   0.0047

Alignments of top-scoring domains:
PF00651.21.fs: domain 1 of 1, from 16 to 122: score 64.2, E = 2e-17
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln++r+ g+lcD+ ++++d          f AHKavLaacS+YF++ 
    KIAA0997    16    LNNQREWGFLCDCCIAIDD--------IYFQAHKAVLAACSSYFRMF 54   

                   Ftgqfkesiteeessvsseieledvspe..dfealLefiYtgelsitqdq
                   F ++        ++s   +++l++++ + + f ++L+f+Y g+++     
    KIAA0997    55 FMNH--------QHSTA-QLNLSNMKISaeCFDLILQFMYLGKIMT---- 91   

                   ksPssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                                + ++ A+++lq++  v  C e ++      
    KIAA0997    92 --------APSSFEQFKVAMNYLQLYN-VPDCLEDIQDAD    122  

PF00651.21.ls: domain 1 of 1, from 16 to 122: score 65.9, E = 1.2e-16
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln++r+ g+lcD+ ++++d          f AHKavLaacS+YF++ 
    KIAA0997    16    LNNQREWGFLCDCCIAIDD--------IYFQAHKAVLAACSSYFRMF 54   

                   Ftgqfkesiteeessvsseieledvspe..dfealLefiYtgelsitqdq
                   F ++        ++s   +++l++++ + + f ++L+f+Y g+++     
    KIAA0997    55 FMNH--------QHSTA-QLNLSNMKISaeCFDLILQFMYLGKIMT---- 91   

                   ksPssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                                + ++ A+++lq++  v  C e ++      
    KIAA0997    92 --------APSSFEQFKVAMNYLQLYN-VPDCLEDIQDAD    122  

PF00096.16.ls: domain 4 of 6, from 536 to 558: score 23.3, E = 0.00083
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp  Cg++F +      H+ ++   
    KIAA0997   536    FRCP-NCGQRFETENLVVEHMSSC    558  

PF00096.16.ls: domain 6 of 6, from 608 to 630: score 20.8, E = 0.0047
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  Cgk F r  +L+ H  +H   
    KIAA0997   608    FVCQ-TCGKQFLRERQLRLHNDMH    630  

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