hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19062085/chunk_1/iprscan-20080502-19062085.nocrc
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Query sequence: KIAA0999
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 354.9   5.3e-102   1
SM00219                                                  70.8    1.7e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     116   367 ..     1   280 []    70.8  1.7e-16
SM00220    1/1     116   367 ..     1   231 []   354.9 5.3e-102

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 116 to 367: score 70.8, E = 1.7e-16
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr
                       + ++++G G+F +V ++t   ++ +VA+K + +   ++++++ + r
    KIAA0999   116    YEIDRTIGKGNFAVVKRATHLvtkAKVAIKIIDKTQldeenLKKIFR 162  

                   EakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldy
                   E +iMk+l   Hp+i++L+ v  +e         +++v+Ey++gG   d+
    KIAA0999   163 EVQIMKML--CHPHIIRLYQVMETE-------RMIYLVTEYASGGEIFDH 203  

                   LrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvv
                   L ++++    ++      QI     + + +n+vHRDL A N L+++n+ +
    KIAA0999   204 LVAHGR-MAEKEARRKFKQIVTAVYFCHCRNIVHRDLKAENLLLDANLNI 252  

                   KIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgk
                   KI+DFG s   + +       +  ++    +g    P+   APE +  ++
    KIAA0999   253 KIADFGFSNLFTPG-------QLLKTW---CGS--PPYA--APELFEGKE 288  

                   Ft.skSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlp
                   + ++k D+WS GV+L+ ++  G+ P  g      + + +++++ +G+ + 
    KIAA0999   289 YDgPKVDIWSLGVVLY-VLVCGALPFDG-----STLQNLRARVLSGKFRI 332  

                   kPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-*
                   +            ++e   l++     dP++R +++++ +++ +   
    KIAA0999   333 PFFM---------STECEHLIRHMLVLDPNKRLSMEQIckHKWM    367  

SM00220: domain 1 of 1, from 116 to 367: score 354.9, E = 5.3e-102
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      Ye+ +++GkG F++V++a++  t+ +vAiK+i++++ ++++ ++i r
    KIAA0999   116    YEIDRTIGKGNFAVVKRATHLVTKAKVAIKIIDktqldeenlKKIFR 162  

                   EikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrr
                   E++i+k+  HP+I++Ly v+e++  +ylV+Ey++G  G+ fd+l+ +gr 
    KIAA0999   163 EVQIMKMlCHPHIIRLYQVMETeRMIYLVTEYASG--GEIFDHLVAHGR- 209  

                   glrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKl
                        + E+ear+ f+Qi+ a+ ++H ++I+HRDLK eN+LLd + ++K+
    KIAA0999   210 -----MAEkEARRKFKQIVTAVYFCHCRNIVHRDLKAENLLLDAnlNIKI 254  

                   aDFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcily
                   aDFG++ ++++++  +t +G+p Y APE+++++ Y++p+vDiWSlG++ly
    KIAA0999   255 ADFGFSNLFtpgqllKTWCGSPPYAAPELFegkEYDGPKVDIWSLGVVLY 304  

                   ElltGkpPFp..qldlifkkig..........SpeakdLikklLvkdPek
                    l++G  PF++++l+ +  ++++++ + +   S e+ +Li+++Lv dP+k
    KIAA0999   305 VLVCGALPFDgsTLQNLRARVLsgkfripffmSTECEHLIRHMLVLDPNK 354  

                   Rlta.eaLedeldikaHPff<-*
                   Rl+ +++ +       H ++   
    KIAA0999   355 RLSMeQICK-------HKWM    367  

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