hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14371965/chunk_1/iprscan-20080501-14371965.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1003 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 247.5 1.9e-79 1 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase 249.2 7.8e-72 1 PF02148.9.fs Zn-finger in ubiquitin-hydrolases and other 31.1 4.2e-08 1 PF02148.9.ls Zn-finger in ubiquitin-hydrolases and other 35.9 1.3e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02148.9.fs 1/1 34 91 .. 1 62 [. 31.1 4.2e-08 PF02148.9.ls 1/1 34 110 .. 1 82 [] 35.9 1.3e-07 PF00443.19.fs 1/1 146 685 .. 1 318 [] 247.5 1.9e-79 PF00443.19.ls 1/1 146 685 .. 1 318 [] 249.2 7.8e-72 Alignments of top-scoring domains: PF02148.9.fs: domain 1 of 1, from 34 to 91: score 31.1, E = 4.2e-08 *->CvstCg.ltenlWlCLt..CGqvgCGryqylgdGgngHaleHyretg C Cg + nlW CL+ C +vgCG+ + +H+ H + KIAA1003 34 C-QSCGvTGPNLWACLQvaCPYVGCGES------FADHSTIHAQAKK 73 Hplavklktqstwcyacd<-* H l v+l+t ++wcyac+ KIAA1003 74 HNLTVNLTTFRLWCYACE 91 PF02148.9.ls: domain 1 of 1, from 34 to 110: score 35.9, E = 1.3e-07 *->CvstCg.ltenlWlCLt..CGqvgCGryqylgdGgngHaleHyretg C Cg + nlW CL+ C +vgCG+ + +H+ H + KIAA1003 34 C-QSCGvTGPNLWACLQvaCPYVGCGES------FADHSTIHAQAKK 73 HplavklktqstwcyacdaYvhqeddeedalDgkylvd<-* H l v+l+t ++wcyac+ v +e + l g + KIAA1003 74 HNLTVNLTTFRLWCYACEKEVFLEQRLAAPLLGS-SSK 110 PF00443.19.fs: domain 1 of 1, from 146 to 685: score 247.5, E = 1.9e-79 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl g+tG +NlGN+CYmN++LQ+L+++ppl+++fl++ + + KIAA1003 146 RGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLV------RT 186 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy ++k l++++++L+++ ++++++s +++ +++ +++ n++f gy KIAA1003 187 DKKPALCKSYQKLVSEVWHKkRPSYVVPTSLS-----HGIKLVNPMFRGY 231 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepess................ QQD +EFl+ L+d+Lhe+l+ p +++ ++ +++++++++ KIAA1003 232 AQQDTQEFLRCLMDQLHEELKE--------PVVAtvalteardsdssdtd 273 RF .................................................. +++++++++++++ + ++++++++++++++++++++ +++ +++ ++ KIAA1003 274 ekregdrspsedeflscdsssdrgegdgqgrgggssqaetellipdeagr 323 RF .................................................. +++++ ++++ + +++++++++ +++ + ++ +++ + ++++++ KIAA1003 324 visekermkdrkfswgqqrtnseqvdedadvdtamaaldqpaeaqppspr 373 RF .................................................. ++++ ++++++++ + ++++++ ++ ++++++ + ++++++ ++ + ++ KIAA1003 374 ssspcrtpepdndahlrsssrpcspvhhheghaklsssppraspvrmaps 423 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ...........dkrpdkaaeawknhltrnesiitdlFqGqlks....... ++ + + ++r +++ r s+i+d+F G+ s ++ ++ KIAA1003 424 yvlkkaqvlsaGSR--------RRKEQRYRSVISDIFDGSILSlvqcltc 465 RF .................................................. ++ +++ ++ ++ + + +++++ + ++ ++ + +++ ++++ ++ KIAA1003 466 drvsttvetfqdlslpipgkedlaklhsaiyqnvpakpgacgdsyaaqgw 515 RF .................................................. + ++ +++++ ++ + +++ ++ ++++ ++++ KIAA1003 516 lafiveyirrfvvsctpswfwgpvvtledclaaffaadelkgdnmyscer 565 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ...........klkikrLPpvLiihLKRFsyngetglnkKiddkVefPle +++ +++ + +k+ rLP++L+ihLKRF + + Ki+ V+fPle KIAA1003 566 ckklrngvkycKV--LRLPEILCIHLKRFRHEVM--YSFKINSHVSFPLE 611 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx Ldlssycnaelkekevlrkdekieklkeerqrdedgnneeepeeeednee ++ + ++a+ e KIAA1003 612 GLDLRPFLAK---------------------------------------E 622 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx genpptkYeLyaVvvHsGsslssGHYiayikkkkengkWykfDDekVsev +++ t+Y+L +V++H+G +++sGHYiay+ + ng+Wy fDD++V+ev KIAA1003 623 CTSQITTYDLLSVICHHG-TAGSGHYIAYCQ-NVINGQWYEFDDQYVTEV 670 RF xxxxxxxxxxxxxxxxx teeevlersssAYiLFY<-* e v + ++Y+LFY KIAA1003 671 HETVV--QNAEGYVLFY 685 PF00443.19.ls: domain 1 of 1, from 146 to 685: score 249.2, E = 7.8e-72 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl g+tG +NlGN+CYmN++LQ+L+++ppl+++fl++ + + KIAA1003 146 RGLTGMKNLGNSCYMNAALQALSNCPPLTQFFLECGGLV------RT 186 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy ++k l++++++L+++ ++++++s +++ +++ +++ n++f gy KIAA1003 187 DKKPALCKSYQKLVSEVWHKkRPSYVVPTSLS-----HGIKLVNPMFRGY 231 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepess................ QQD +EFl+ L+d+Lhe+l+ p +++ ++ +++++++++ KIAA1003 232 AQQDTQEFLRCLMDQLHEELKE--------PVVAtvalteardsdssdtd 273 RF .................................................. +++++++++++++ + ++++++++++++++++++++ +++ +++ ++ KIAA1003 274 ekregdrspsedeflscdsssdrgegdgqgrgggssqaetellipdeagr 323 RF .................................................. +++++ ++++ + +++++++++ +++ + ++ +++ + ++++++ KIAA1003 324 visekermkdrkfswgqqrtnseqvdedadvdtamaaldqpaeaqppspr 373 RF .................................................. ++++ ++++++++ + ++++++ ++ ++++++ + ++++++ ++ + ++ KIAA1003 374 ssspcrtpepdndahlrsssrpcspvhhheghaklsssppraspvrmaps 423 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ...........dkrpdkaaeawknhltrnesiitdlFqGqlks....... ++ + + ++r +++ r s+i+d+F G+ s ++ ++ KIAA1003 424 yvlkkaqvlsaGSR--------RRKEQRYRSVISDIFDGSILSlvqcltc 465 RF .................................................. ++ +++ ++ ++ + + +++++ + ++ ++ + +++ ++++ ++ KIAA1003 466 drvsttvetfqdlslpipgkedlaklhsaiyqnvpakpgacgdsyaaqgw 515 RF .................................................. + ++ +++++ ++ + +++ ++ ++++ ++++ KIAA1003 516 lafiveyirrfvvsctpswfwgpvvtledclaaffaadelkgdnmyscer 565 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ...........klkikrLPpvLiihLKRFsyngetglnkKiddkVefPle +++ +++ + +k+ rLP++L+ihLKRF + + Ki+ V+fPle KIAA1003 566 ckklrngvkycKV--LRLPEILCIHLKRFRHEVM--YSFKINSHVSFPLE 611 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx Ldlssycnaelkekevlrkdekieklkeerqrdedgnneeepeeeednee ++ + ++a+ e KIAA1003 612 GLDLRPFLAK---------------------------------------E 622 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx genpptkYeLyaVvvHsGsslssGHYiayikkkkengkWykfDDekVsev +++ t+Y+L +V++H+G +++sGHYiay+ + ng+Wy fDD++V+ev KIAA1003 623 CTSQITTYDLLSVICHHG-TAGSGHYIAYCQ-NVINGQWYEFDDQYVTEV 670 RF xxxxxxxxxxxxxxxxx teeevlersssAYiLFY<-* e v + ++Y+LFY KIAA1003 671 HETVV--QNAEGYVLFY 685 //