# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj01244.fasta.huge -Q ../query/KIAA1004.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1004, 1163 aa vs ./tmplib.24314 library 1986342 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 7.3905+/-0.00716; mu= 6.6311+/- 0.487 mean_var=203.6366+/-48.338, 0's: 0 Z-trim: 4 B-trim: 0 in 0/40 Lambda= 0.089877 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1111 ( 1084 res) hj04651s1 (1084) 643 96.9 1.7e-20 KIAA0662 ( 1114 res) hk01953s1 (1114) 522 81.2 9.2e-16 >>KIAA1111 ( 1084 res) hj04651s1 (1084 aa) initn: 861 init1: 640 opt: 643 Z-score: 459.8 bits: 96.9 E(): 1.7e-20 Smith-Waterman score: 955; 39.372% identity (66.425% similar) in 414 aa overlap (35-439:143-537) 10 20 30 40 50 60 KIAA10 EEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFN :. :: : . .: . . . :.... KIAA11 CEVLHGPSIMKKRRGSSKGHDTHKGKPVKTGSPTFVRELRSRTFDSSDEVILKPTGNQLT 120 130 140 150 160 170 70 80 90 100 110 120 KIAA10 VEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTM ::....... :.. ..::::. .:.:.::: ::. ::: . .::.::. : .: . KIAA11 VEFLEENSFSVPILVLKKDGLGMTLPSPSFTVRDVEHYVGSDKEIDVIDVTRQADCKMKL 180 190 200 210 220 230 130 140 150 160 170 180 KIAA10 AQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTE .....:: . . :::. :::::::: ::: :.:. :. : ..::.:.::.. KIAA11 GDFVKYYYSGK--REKVLNVISLEFSDTRLSNLVETPKIVRKLSWVENLWPEE------- 240 250 260 270 280 190 200 210 220 230 240 KIAA10 STNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLEL ..: :.:::::::::: :::::.::::::::::. .: :.:.:: :: :: : KIAA11 ---CVFE--RPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTL 290 300 310 320 330 250 260 270 280 290 300 KIAA10 YENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSF .: : :..:...:.::.:. : . .::: :. ::.:::::: ::.: :.::::::::. KIAA11 FECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSL 340 350 360 370 380 390 310 320 330 340 350 360 KIAA10 NIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYV----LERYVYCITNRSHLTKEFQKESL :: :::: :.:: : . . ::.: . .:::: :. . :: : .. . . . KIAA11 NIEMQLKAYEIEKRLSTADLFRFPNFETICWYVGKHILDIFRGLRENRRHPASYLVHGGK 400 410 420 430 440 450 370 380 390 400 410 KIAA10 SMDLELNGLESGNGDEEAVDREPRRLSSRRSVLTSPVANGVNLDYD----GLGKTCRSLP ...: . . .. . :. :. . : : . .: . : : ..::: .. KIAA11 ALNLAFRAWTRKEALPDHEDEIPETV--RTVQLIKDLAREIRLVEDIFQQNVGKTS-NIF 460 470 480 490 500 510 420 430 440 450 460 470 KIAA10 SLKKTL-AGDSSSDCSRGSHNGQVWDPQCAPRKDRQVHLTHFELEGLRCLVDKLESLPLH .:.. . :: : .: .:. .: KIAA11 GLQRIFPAG--SIPLTRPAHSTSVSMSRLSLPSKNGSKKKGLKPKELFKKAERKGKESSA 520 530 540 550 560 570 >>KIAA0662 ( 1114 res) hk01953s1 (1114 aa) initn: 692 init1: 517 opt: 522 Z-score: 374.8 bits: 81.2 E(): 9.2e-16 Smith-Waterman score: 805; 33.000% identity (65.250% similar) in 400 aa overlap (35-432:98-480) 10 20 30 40 50 60 KIAA10 EEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFN :.. : : . .: . :. . :.... KIAA06 KTHGKSTLKKKRTWHKHGPGQAPDVKPVQNGSQLFIKELRSRTFPRAEDVVARVPGSQLT 70 80 90 100 110 120 70 80 90 100 110 120 KIAA10 VEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTM . :... :. .:.. ..::::. .: : : :.::. :: .: ::: ::. :: .: . KIAA06 LGYMEEHGFTEPILVPKKDGLGLAVPAPTFYVSDVENYVGPERSVDVTDVTKQKDCKMKL 130 140 150 160 170 180 130 140 150 160 170 180 KIAA10 AQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTE ... :: . .:... :: .:::: ::. ..:. :. : ..::.:.:: KIAA06 KEFVDYYYST--NRKRVLNVTNLEFSDTRMSSFVEPPDIVKKLSWVENYWP--------- 190 200 210 220 230 190 200 210 220 230 240 KIAA10 STNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLEL .:.: ::: ::::. :. :::::.: ::.:.:::. .: :.:.:: :.. :. : KIAA06 -DDALLA--KPKVTKYCLICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISL 240 250 260 270 280 290 250 260 270 280 290 300 KIAA10 YENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSF :: : .......:..:.:. : . .::: :. ::::::.:. ::.: :.:.:.::::. KIAA06 YERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSL 300 310 320 330 340 350 310 320 330 340 350 360 KIAA10 NIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLSMDL .. ::.. :..: : .. . ..: . :::. .. . . . . :.. . .. KIAA06 SVEMQMRAYEVERRLKLGSLTQFPNFETACWYMGKHLLEAFKGSHKSGKQLPPHLVQGAK 360 370 380 390 400 410 370 380 390 400 410 420 KIAA10 ELNGLESGNGDEEAVDREPRRLSS--RRSVLTSPVANGVNLDYDGLGKTCRSLPSLKKTL ::: . ..:. .. .: . : : . .:. . :. .. .:. : : .. . KIAA06 ILNGAFRSWTKKQALAEHEDELPEHFKPSQLIKDLAKEIRLSENA-SKAVR--PEVNTVA 420 430 440 450 460 470 430 440 450 460 470 480 KIAA10 AGDSSSDCSRGSHNGQVWDPQCAPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPTG ..: : .: KIAA06 SSDEVCDGDREKEEPPSPIEATPPQSLLEKVSKKKTPKTVKMPKPSKIPKPPKPPKPPRP 480 490 500 510 520 530 1163 residues in 1 query sequences 1986342 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:05:22 2008 done: Thu Dec 18 15:05:22 2008 Total Scan time: 0.750 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]