hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14390497/chunk_1/iprscan-20080501-14390497.nocrc
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Query sequence: KIAA1004
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02008.10.fs CXXC zinc finger                                63.4    3.1e-25   1
PF02008.10.ls CXXC zinc finger                                65.4    1.7e-16   1
PF02373.13.fs JmjC domain                                     24.5    8.4e-07   2
PF00646.23.fs F-box domain                                    27.5    2.8e-06   2
PF02373.13.ls JmjC domain                                     23.3    5.3e-06   1
PF00646.23.ls F-box domain                                    26.5    8.9e-05   1
PF00560.23.ls Leucine Rich Repeat                             19.4      0.012   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02373.13.ls   1/1     200   300 ..     1   126 []    23.3  5.3e-06
PF02008.10.ls   1/1     564   610 ..     1    49 []    65.4  1.7e-16
PF02008.10.fs   1/1     564   610 ..     1    49 []    63.4  3.1e-25
PF00628.19.fs   1/1     620   679 ..     1    51 []    10.0   0.0081
PF00646.23.ls   1/1     889   936 ..     1    46 []    26.5  8.9e-05
PF00646.23.fs   1/2     897   936 ..     9    46 .]    26.1  6.6e-06
PF00560.23.ls   5/5    1121  1145 ..     1    24 []     8.0      8.5

Alignments of top-scoring domains:
PF02373.13.ls: domain 1 of 1, from 200 to 300: score 23.3, E = 5.3e-06
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkv.WYgiPseyaekfe
                      ++ +++ +++t++H++  g++ ++y++  + kv W + P+++  ++ 
    KIAA1004   200    YCLMSVRGCYTDFHVDFGGTS-VWYHIHQGGKVfWLIPPTAHNLELY 245  

                   klakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfv
                          +++    l +g+q d    +l + +s ++           r++
    KIAA1004   246 -------ENW----LLSGKQGDI---FLGDRVSDCQ-----------RIE 270  

                   QkpGEfVitfPgayHavfNlGfniaeavNF<-*
                    k+G + ++++g++Hav +  +++ +  NF   
    KIAA1004   271 LKQGYTFVIPSGWIHAVYTPTDTLVFGGNF    300  

PF02008.10.ls: domain 1 of 1, from 564 to 610: score 65.4, E = 1.7e-16
                   *->qnsrkrrrCGvCegCqrpeDCGqCtaCldkpkFGGpgrkkQWkCiqR
                       ++r+r+rC++C +C +  +CG+C++C+d++kFGGpgr+kQ +C+ R
    KIAA1004   564    GARRRRVRCRKCKACVQG-ECGVCHYCRDMKKFGGPGRMKQ-SCVLR 608  

                   RC<-*
                   +C   
    KIAA1004   609 QC    610  

PF02008.10.fs: domain 1 of 1, from 564 to 610: score 63.4, E = 3.1e-25
                   *->qnsrkrrrCGvCegCqrpeDCGqCtaCldkpkFGGpgrkkQWkCiqR
                       ++r+r+rC++C +C +  +CG+C++C+d++kFGGpgr+kQ +C+ R
    KIAA1004   564    GARRRRVRCRKCKACVQG-ECGVCHYCRDMKKFGGPGRMKQ-SCVLR 608  

                   RC<-*
                   +C   
    KIAA1004   609 QC    610  

PF00628.19.fs: domain 1 of 1, from 620 to 679: score 10.0, E = 0.0081
                   *->yCsvCgkey.....sdaggdllqCDgCdrwfHlaClgpplepeeipe
                       Cs Cg+ ++++++ d +++l+ C  C++ +H+ Cl ++ e  +++ 
    KIAA1004   620    TCSLCGEVDqneetQDFEKKLMECCICNEIVHPGCLQMDGE--GLLN 664  

                   ......WyCpeCkpk<-*
                   ++ ++ W Cp+C  +   
    KIAA1004   665 eelpncWECPKCYQE    679  

PF00646.23.ls: domain 1 of 1, from 889 to 936: score 26.5, E = 8.9e-05
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                         + +  e+++ ++++L++++l+ +++V+k+w++ + +++lw ++ 
    KIAA1004   889    GDESWMQREVWMSVFRYLSRRELCECMRVCKTWYKWCCDKrLWTkID 935  

                   l<-*
                   l   
    KIAA1004   936 L    936  

PF00646.23.fs: domain 1 of 2, from 897 to 936: score 26.1, E = 6.6e-06
                   *->ellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kll<-*
                      e+++ ++++L++++l+ +++V+k+w++ + +++lw ++ l   
    KIAA1004   897    EVWMSVFRYLSRRELCECMRVCKTWYKWCCDKrLWTkIDL    936  

PF00560.23.ls: domain 5 of 5, from 1121 to 1145: score 8.0, E = 8.5
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      n++ +dL+gC  ++t++  ++ +++l   
    KIAA1004  1121    NVTLIDLRGC-KQITRKACEHfIsDL    1145 

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