hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14390497/chunk_1/iprscan-20080501-14390497.nocrc
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Query sequence: KIAA1004
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 131.8    7.2e-35   1
SM00367                                                  32.7    5.1e-05   3
SM00249                                                  29.2    0.00056   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00558    1/1     149   317 ..     1   214 []   131.8  7.2e-35
SM00249    1/1     620   677 ..     1    39 []    29.2  0.00056
SM00367    1/3    1001  1026 ..     1    26 []     1.5  4.7e+02
SM00367    2/3    1064  1092 ..     1    26 []    20.7      0.2
SM00367    3/3    1096  1119 ..     1    26 []    10.4       34

Alignments of top-scoring domains:
SM00558: domain 1 of 1, from 149 to 317: score 131.8, E = 7.2e-35
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      +++++l+n+++ P              + +++++    w+d+ +p  
    KIAA1004   149    FSHTRLENMVQRP--------------STVDFID----WVDNMWPRH 177  

                   gk...............PkpkpylymGmaEsrgstTpwHiDdydlySvNy
                    k++++++++   + + Pk+++y++m++    g++T++H+D++++  +++
    KIAA1004   178 LKesqtestnailemqyPKVQKYCLMSVR---GCYTDFHVDFGGT--SVW 222  

                   lhqgagedGKrWyliPpedaeklekllkkhgkefhistapdlfkeqpdll
                   +h  +g   K+++liPp+  +  +++                        
    KIAA1004   223 YHIHQGG--KVFWLIPPTAHNLELYEN----------------------- 247  

                   ihlstwispevlkkrlkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHa
                   + ls  + +++l++r             ++ r+++k+G +++iP+Gw+Ha
    KIAA1004   248 WLLSGKQGDIFLGDRV-----------SDCQRIELKQGYTFVIPSGWIHA 286  

                   VfnlGkfniavavNFaspewlpmglrlveelr<-*
                   V+++  +++ +++NF++++++pm+l++++ +    
    KIAA1004   287 VYTPT-DTLVFGGNFLHSFNIPMQLKIYNIED    317  

SM00249: domain 1 of 1, from 620 to 677: score 29.2, E = 0.00056
                   *->yC.vCgk...........g.llqCdkgCdrwyHv.Clgpple.....
                      +C++Cg+ + ++++ + + +l+ C   C+  +H++Cl++++e+  ++
    KIAA1004   620    TCsLCGEvdqneetqdfeKkLMECC-ICNEIVHPgCLQMDGEgllne 665  

                   epdg.wyCprCk<-*
                   e +  w Cp+C    
    KIAA1004   666 ELPNcWECPKCY    677  

SM00367: domain 1 of 3, from 1001 to 1026: score 1.5, E = 4.7e+02
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      Cp L++LdL++ + i D  ++ L      
    KIAA1004  1001    CPLLRTLDLRWAVGIKDPQIRDLLTP    1026 

SM00367: domain 2 of 3, from 1064 to 1092: score 20.7, E = 0.2
                   *->CpnLkeLdLsgCsniTD...eglqaLakg<-*
                      +p L +LdLs+Cs++TD++++ l a++++   
    KIAA1004  1064    MPLLSRLDLSHCSHLTDqssNLLTAVGSS    1092 

SM00367: domain 3 of 3, from 1096 to 1119: score 10.4, E = 34
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                        +L+eL++ gC ++TD++l++L +    
    KIAA1004  1096    --SLTELNMAGCNKLTDQTLIYLRRI    1119 

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