# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk10066.fasta.huge -Q ../query/KIAA1005.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1005, 1055 aa
 vs ./tmplib.24314 library

1986450 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 9.0929+/-0.00847; mu= -5.3986+/- 0.570
 mean_var=357.7448+/-91.855, 0's: 0 Z-trim: 14  B-trim: 136 in 1/39
 Lambda= 0.067809

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1081  ( 1003 res)   bg00262                    (1003)  249 39.6  0.0026


>>KIAA1081  ( 1003 res)   bg00262                         (1003 aa)
 initn: 167 init1:  78 opt: 249  Z-score: 151.3  bits: 39.6 E(): 0.0026
Smith-Waterman score: 264;  24.812% identity (56.642% similar) in 399 aa overlap (4-390:550-912)

                                          10        20           30
KIAA10                            QDADVAETPHPMFTKYGNSLLEEARG---EIRN
                                     :: :    .. :  ..: :. :    .. .
KIAA10 MLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSS
     520       530       540       550       560       570         

               40        50        60        70        80        90
KIAA10 LENVIQSQRGQIEELEHLAEILKTQLRRKENEIELSLLQLREQQATDQRSNIRDNVEMIK
       :.. ..: ...  . .     :.  : .::  ::    .:.::.  :.: . ..  .. :
KIAA10 LKERVKSLQADTTNTDTALTTLEEALAEKERTIE----RLKEQRDRDEREKQEEIDNYKK
     580       590       600       610           620       630     

                  100       110       120       130       140      
KIAA10 LHKQLVEK----SNALSAMEGKFIQLQEKQRTLKISHDALMANGDELNMQLKEQRLKCCS
         :.: ::    .. ::  :.....:.:.  .:  :     .    :.. :.... .: .
KIAA10 DLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLK
         640       650       660       670       680       690     

        150          160       170       180       190       200   
KIAA10 LEKQL---HSMKFSERRIEELQDRINDLEKERELLKENYDKLYDSAFSAAHEEQWKLKEQ
       .:.::   :   .  :   :..:::. :  :::. .      : .  : :. :  .: : 
KIAA10 MESQLKKAHEAALEARASPEMSDRIQHL--EREITR------YKDESSKAQAEVDRLLEI
         700       710       720               730       740       

           210       220       230         240       250       260 
KIAA10 QLKVQIAQLETALKSDLTDKTEILDRLKTE--RDQNEKLVQENRELQLQYLEQKQQLDEL
         .:.        :.:   :   :. : ..  .:::.:... ... :..  .. :.:.: 
KIAA10 LKEVE------NEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQVEKKKSAQMLEEA
       750             760       770       780       790       800 

             270       280       290       300       310       320 
KIAA10 KKRIKLYNQENDINADELSEALLLIKAQKEQKNGDLSFLVKVDSEINKDLERSMRELQAT
       ..:    .. :: ....:...:     .:...  .:   .. . .:.   :: :   :  
KIAA10 RRR---EDNLND-SSQQLQDSL----RKKDDRIEELEEALRESVQITA--EREMVLAQEE
                810            820       830       840         850 

             330       340       350       360       370       380 
KIAA10 HAETVQELEKTRNMLIMQHKINKDYQMEVEAVTRKMENLQQDYELKVEQYVHLLDIRAAR
        :.:  : ......:. ..:.    ..:.:..  :. . ::.    .:. .:: ..:: :
KIAA10 SARTNAE-KQVEELLMAMEKV----KQELESMKAKLSSTQQSL---AEKETHLTNLRAER
              860       870           880          890       900   

             390       400       410       420       430       440 
KIAA10 IHKLEAQLKDIAYGTKQYKFKPEIMPDDSVDEFDETIHLERGENLFEIHINKVTFSSEVL
        ..::  :.                                                   
KIAA10 RKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQT
           910       920       930       940       950       960   




1055 residues in 1 query   sequences
1986450 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:05:24 2008 done: Thu Dec 18 15:05:25 2008
 Total Scan time:  0.680 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]