hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14404977/chunk_1/iprscan-20080501-14404977.nocrc
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Query sequence: KIAA1005
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                  39.8    3.6e-07   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/2     435   532 ..     1    92 []     1.2       54
SM00239    2/2     611   716 ..     1    92 []    38.6  8.4e-07

Alignments of top-scoring domains:
SM00239: domain 1 of 2, from 435 to 532: score 1.2, E = 54
                   *->tLtvkiisArnLp..DPYVkvs......kTkvvkktlsgfNPvWnEe
                      t+   +++A + + +  +++    +   +T  v + l   +P++n +
    KIAA1005   435    TFSSEVLQASGDKepVTFCTYAfydfelQTTPVVRGL---HPEYNFT 478  

                   setFeFevpp........s.LeieVyDk.....dfiGrvtippnnahqhs
                     ++ ++v++   +  +++++++eV    +++ + i  +++         
    KIAA1005   479 -SQYLVHVNDlflqyiqkNtITLEVHQAysteyETIAACQLK-------- 519  

                   adglihlsell.ggrh.kl<-*
                         + e+l+  ++  +   
    KIAA1005   520 ------FHEILeKSGRiFC    532  

SM00239: domain 2 of 2, from 611 to 716: score 38.6, E = 8.4e-07
                   *->tLtvkiisArnLp........DPYVkvs.......kTkvvkktlsgf
                       L+++i ++++L ++ ++  + PYV+ +  +  ++ T +++ ++   
    KIAA1005   611    ELHITIRCCNHLQsrashlqpHPYVVYKffdfadhDTAIIPSSN--- 654  

                   NPvWnEesetFeFevpp..........s.LeieVyDk......dfiGrvt
                    P++++   +++F+vp + + ++  ++ +L + V+D++++ ++  iG+v+
    KIAA1005   655 DPQFDD---HMYFPVPMnmdldrylksEsLSFYVFDDsdtqenIYIGKVN 701  

                   ippnnahqhsadglihlsell.ggrh.kl<-*
                   +p              l +l +    ++    
    KIAA1005   702 VP--------------LISLAhDRCIsGI    716  

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